BAC Information

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BAC

Clone NameMSMg01-399D20
Chromosome4 (Build37)
Map Location 84,137,834 - 84,138,154
singlet/doubletsinglet
Overlap geneBnc2
Upstream geneLOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399D20.T7 (MSMg01no399_d20.b1)MSMg01-399D20.TJ (MSMg01no399_d20.g1)
ACCAG499150AG499151
length747743
length of high quality
(start - end)
245 (76 - 320)321 (75 - 395)
definitionCHROMAT_FILE: MSMg01no399_d20.b1 PHD_FILE: MSMg01no399_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:12 2005CHROMAT_FILE: MSMg01no399_d20.g1 PHD_FILE: MSMg01no399_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGACATGAATCC
GCGGAATTCAAGACTTCCCACTGATGGCAGGAACTGATGCAAAGCCCATG
GAGGAACACTGCTTACTGCCTTGCTCCTCATGACTTGCTCAGTCTCCTTT
CTGATGCAGTCCAGAACCACCTGCCCAGGAGTGGTCGGCACACACAGTAG
GCTGGGCCCTTCCCCACTTAATTAGTGAATTAATTAATTAATTAATCACT
AATTAAGAAAATGCCCCATAGGCTTGCCCGAGGGCCAGTCTTTTTTTTTT
TTTTAGTTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATC
CCAAAAGTCTCCTATACCCTCCTCCTGCCCTGCTCCCCTATCCTCTCACT
CCCACTTCTTGGCACTGGCACCCCCCTGTACTGTGGTATATAAAGCTCGC
TAGATCATGGTTTCTCTCTTTTCAATGATGGTCAACTAGGTCTATCTTCT
GCCAGCCTTATAGAGGCATTTTACTCACTATGTCCCCCGCCCCATATCTC
CACTTTGCCTCTAACCGACTTCAAATACCTCTGCCTATATGTACTATTTT
TCCAATCTACCGTTCGTGTGTGAGCATCTCGTTTCCCTCCTTATTCGACT
CTCCTCCCTATCCTTTTTTTATATCTTTTTCCCATTATTGCCTCGCCTAC
TGCCCTTTACTGTCTTTTTTTTTTTCCTACTACCCTTTGTTCTTCTA
CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTCTGATTTTGATGTATTGAGTT
CTTTTCTTGCCTCTTCTTGCCCATAGATATATAATTCGGGTCTGCTGTAT
TCTTTCAAAGGAAGAATTGGCAGGGCAGTTGCTGTTACTTAGGATAAGTA
TGTAATCTCCTTGACTTTCTCTTGTTGGGCAAACTGCCCAGTGAATATCA
ATTTTTTTAGAGCTACAAATATGGTTTTAATAGATTCACAGATTTTAAAT
TATTATAATTCAGGGCACGTCTCTCCCAGGGCGAGCAAATAACTCATAAC
AATCCATGTAGATGCAAAGGAGATGACAATTGATCAATCTGCATGTGAGT
ACATTGACAGAGTCACCGCCCCTCTTTTCTCTCCTAACCCTCCCCACAAC
ATTCAGACTATTTCACATGGAAAAAATGCCTGTCTATGGGAGTTCAAATT
ACTCATAATACCTACTTTGGGGACTGAAGAACACTTACTGTAAATCATTC
TCTCAGAAACCACACTTGACATATTTTGTTTATAATCATACTGTTATGTC
GCTAATATTGTACGTATTGACTGGCTCTTGAGATTGTTTTGCTCTTGTAC
TGCCATATATTGAATGTGAACAACCCCCAGGTTTGATCATTGTTCCCGAA
CATCTCATTTCACCCCATCTTTCTTTCTTTCTTACCCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_d20.g1 MSMg01no399_d20.g1 CHROMAT_FILE:
MSMg01no399_d20.g1 PHD_FILE: MSMg01no399_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:12 2005
         (321 letters)



>mm_chr4_84137634_84138354
          Length = 721

 Score =  582 bits (301), Expect = e-171
 Identities = 316/321 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttctgattttgatgtattgagttcttttcttgcctcttcttgcccatagatatataa 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 201 actttctgattttgatgtattgagttcttttcttgcctcttcttacccatagatgtataa 260

                                                                       
Query: 61  ttcgggtctgctgtattctttcaaaggaagaattggcagggcagttgctgttacttagga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttcgggtctgctgtattctttcaaaggaagaactggcagggcagttgctgttacttagga 320

                                                                       
Query: 121 taagtatgtaatctccttgactttctcttgttgggcaaactgcccagtgaatatcaattt 180
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactatgtaatctctttgactttctcttgttgggcaaactgcccagtgaatatcaattt 380

                                                                       
Query: 181 ttttagagctacaaatatggttttaatagattcacagattttaaattattataattcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagagctacaaatatggttttaatagattcacagattttaaattattataattcagg 440

                                                                       
Query: 241 gcacgtctctcccagggcgagcaaataactcataacaatccatgtagatgcaaaggagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacgtctctcccagggcgagcaaataactcataacaatccatgtagatgcaaaggagat 500

                                
Query: 301 gacaattgatcaatctgcatg 321
           |||||||||||||||||||||
Sbjct: 501 gacaattgatcaatctgcatg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)