CCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAAGAG
ATCCGCGGAATTCTCAATTTATCAAAATATTTACTTTTAATAAATAACAA
AAAGTAAAAGAAATGGAAGAAAGGCTTTCTAAGAGGAAGACCTGCTTTTT
AAGTGGGAAGATTTATGTGAAAATAGCTACAACAATACCACAAAACAATG
CTTACACTGTTGTCACCAACCGGTCCATACCCAGGACCCTATGAACTCAC
ATTGTTCCTCATTGGCTAAAGAAGGATGAATTGGCATTAGCTTCCCTGCT
TCTTCCCCATGTACCTGAGATGTGTATGATAAATTATTTGTTCCTCGAGT
TTACAAAGAAGGAAGACGTTTGTACAGCTAGGTGGTTTGAGCCTTTTGCA
GCTTCTCATTGTACTCTTGTGAACTGCAAGGTAACACTGATTTCCCATTC
TCTGCTTGCCTCTGCACCGCCCCCACCACTCCCGTCATTAGCACAGGATC
TACCACAAGGGGGCGCTCAATAAAAGGTCCCTAATCACTAAGACTCAGTA
GAGCACCCTAGACAGGATAGACTGACAGACAGACAGATTACCAAAAGCTT
CTGCCCTTTAGCGATTCACAGGCATAAACCTGAATGACCAAAAACATACA
TATACTTGCTTCTATGTTGCGTGATACACGCGTCCAAGTAAATATATATT
AGTCCCTCCCTCCAAAT

TTTTCGATGATGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATCTCTGCCCTTTGGTTCTTTA
CACATCAGGCTGGAAAAGCTCTTCCTCTGTTTGTCACATGCTGTTGTTTC
AGAACTCATCTCCAGAACCACCCAGGCGTTCAGTCTTTGTATACCCATGA
GGAGGACTGACACGTTCTGCCGCAGTCCCTTGCTTGGTAAATATCCTTTG
TTTCTCCTACTGCTGTACTGTGAGCTCCCGTAACCCAATGCCTGTTTCTG
TGCCTCCAAATTCCCACCTCTCTTTGCTTTTTTAACATACGAATGTATGT
ATTTTTCCCATTATTTTTCTCTTTTCCCCGCCTATGTAGCTTGTTTCATA
CTGTTCTATTATTGTTTATACTCCGTCCCCTTTCCGCTTATTTTTCGTTT
TCTTTCCGCCCCTTACTGCCCTACCTCTCGACCACTTTCTGTCCTATCCT
TTGCCTATTTACTGCTTCATCCACTTGCCTTCTCCCTTTTTTACAATTGC
CCCACCACCGCCCCTTTACTTTGTCCACCACTTGTCCTACTCTTTTGCCT
CCCCACTTGTCTTACTTTCTCGTCCCCCTCTTGTTTTTTTCTTTTGTTCC
ACCCCTTGCCCTTTTTACCGTCCCTTCTTTTTGCCCCTTTTCTTTTTTTT
CTTTTTGTCCCATTCCCCGCCCCCTCTTTCGCCCTTTTTTCTCCCCTCCC
CACTT

Query= MSMg01no399_e05.b1 MSMg01no399_e05.b1 CHROMAT_FILE:
MSMg01no399_e05.b1 PHD_FILE: MSMg01no399_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:14 2005
         (426 letters)



>mm_chr4_105213219_105214040
          Length = 822

 Score =  700 bits (362), Expect = 0.0
 Identities = 409/426 (96%), Gaps = 6/426 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttacttttaataaataacaaaaagtaaaagaaatggaagaaaggctttctaagagga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatttacttttaataaataataaaaagtaaaagaaatggaagaaaggctttctaagagga 562

                                                                       
Query: 61  agacctgctttttaagtgggaagatttatgtgaaaatagctacaacaataccacaaaaca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 agacctgctttttaagtgggaagatttatgtgaaagtagctacaacaataccacaaaaca 502

                                                                       
Query: 121 atgcttacactgttgtcaccaaccggtccatacccaggaccctatgaactcacattgttc 180
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 501 atgcttacactgttgtcaccaaccagtccatacccagcaccctatgaactcacattgttc 442

                                                                       
Query: 181 ctcattggctaaagaaggatgaattggcattagcttccctgcttcttccccatgtacctg 240
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 441 ctcattggctaaagaaggatgaattggcatcagcttctctgcttcttccccatgtacctg 382

                                                                       
Query: 241 agatgtgtatgataaattatttgttcctcgagtttacaaagaaggaagacgtttgtacag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtgtatgaaaaattatttgttcctcgagtttacaaagaaggaagacgtttgtacag 322

                                                                       
Query: 301 ctaggtggtttgagccttttgcagcttctcattgtactcttgtgaactgcaaggtaacac 360
           |||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||
Sbjct: 321 ctaggtggtttgagccttttgcagtttttcattgtactcttgtgagctggaaggtaacac 262

                                                                       
Query: 361 tgatttcccattctctgcttgcctctgcaccgcccccaccactcccgtc-attagcacag 419
           ||||||||||||||||||||||||||||||| ||||||||   ||| || ||||||||||
Sbjct: 261 tgatttcccattctctgcttgcctctgcacc-cccccacc---ccc-tccattagcacag 207

                 
Query: 420 gatcta 425
           ||||||
Sbjct: 206 gatcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 822
Length adjustment: 9
Effective length of query: 417
Effective length of database: 813
Effective search space:   339021
Effective search space used:   339021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)