BAC Information

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BAC

Clone NameMSMg01-399I14
Chromosome4 (Build37)
Map Location 126,482,756 - 126,483,087
singlet/doubletsinglet
Overlap geneAU040320
Upstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn
Downstream geneSfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399I14.T7 (MSMg01no399_i14.b1)MSMg01-399I14.TJ (MSMg01no399_i14.g1)
ACCAG499376AG499377
length705765
length of high quality
(start - end)
328 (73 - 400)---
definitionCHROMAT_FILE: MSMg01no399_i14.b1 PHD_FILE: MSMg01no399_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:35 2005CHROMAT_FILE: MSMg01no399_i14.g1 PHD_FILE: MSMg01no399_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAAAATTTGGGCGCTATACGACCATATATCCCGAGCTCCGGGAATTAC
TCCGAGCACACTGAATTGGATTAATTCGCCCTCTTGCCTCTGCCTTCCAG
TGTTGGTATTATAGGTAGAAGCACCTTGCCCCGTAACATTGCCATGCCTG
TATCTTTCCTTCTCAGTATTAGCATCCTTCAGCTTAGTAGCTCCTAACTC
CAAGTCTTCCCTGGAGCTTGCTATGTAACTCACCACAACCCACCTGCCTC
TGCCTCCACCTGAGGACTGGCAGAGAGGCATGCCCAAATATACTTCGCTC
TTGCTGTTTTCCTGGCTTCCTGATACACCTAACCCCACTGTTTCCTTCTT
TCCTCTCCCCTCTGTCTTCCCTTTCTGCTTTTCTTGTCTTCTTTCTTACC
CCCCGCCCCATGCTGGCCTTGACTAATGTACCTGATGATGACCTTGAATT
TGTAGTGCTCTTGCATCTATTTTACGGTTCTGAGATCTACAGGCATGCAT
CCCTGCAGCCGTTTATGTGGTGCTGGGATTACCCAGTTGCCTCCTGCTAG
GTTGGCTCTGGATAAACTGAGTTCTGTCCCCCGTGTCTCTTCAAGCCTAT
CTAAGGTACGGATAGCCCTGACCCGTTTCATGCCCGAGAGGATAGATAAG
ATCCAGGCTTGCCGGGATTCTTCTGTGAAGTAATCAGGACCAAGGTAAGC
CCTCT
CGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCGTTCAGCCCAGGCTACTCTGCCTCAA
AAACCATAAAATAACTCTAGAACAATGCATGCTTTATATGTCATTGTCGT
ATGTACCGTTCCTGACCACTGGTTAGACTATCATAATTAACCCGCTACAT
TGCATTTGCTTTACCCCCATTTGATATTCGTTTATACCCTCTTTCCCCAC
CAGTCACGTCTGATTGAGTGTACTCTTACAATGGACAAAAACTTACTGCA
CCCATGTATCCCATCCTGTTGTACTTTTCTTCCCCCTGTTCTCTCATTTG
CTCCTCCATCTCACGTTGGCGAATCACCATCTCCTCTTCTCATCTACTTC
GTTCCTTCCTCTCGCTTATCCCCATCTTCTATTTTTATTATACATATTGT
CATCCATGCCTACCACTCCCCATGCCTACTGTGATTTTTTTCTTTTTCGC
CCCCATATTTATCCCTTATTACCTTCTACCCGCACCCTCTTTTTTTTGTT
ACCCCCCCCTTTTACTTCTCATTCCCCCCCCCTTTCCCTATTCTTCTCAA
CACCCCTCCCGAATTCGTACCTAAGTTCTGCCCCCCCTCTTAGCTTCCTC
TTCCCCTCCAGCTCAATTTTTCCCCATACTATAATCTCTCGTTGTCCTTC
CCCCCCACTCCTCTTCCCTCCCCTTCTTTTCCTCCCCCCCTCTGTGTATT
TTTACCCACCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_i14.b1 MSMg01no399_i14.b1 CHROMAT_FILE:
MSMg01no399_i14.b1 PHD_FILE: MSMg01no399_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:35 2005
         (328 letters)



>mm_chr4_126482555_126483289
          Length = 735

 Score =  534 bits (276), Expect = e-156
 Identities = 318/334 (95%), Gaps = 11/334 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   attcgccctcttgcctctgccttcc-agtgttggtattataggtagaag-caccttgccc 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 202 attcgccctcttgcctctgccttccaagtgttggtattataggtagaagccaccttgccc 261

                                                                       
Query: 60  cgtaacattgccatgcctgtatctttccttctcagtattag-catccttc-agcttagta 117
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 262 cgtaacattgccatgcctgtatctttccttctcagtattagccatccttcaagcttagta 321

                                                                       
Query: 118 gctcctaactccaagtcttccctggagcttgctatgt-aactcaccacaacccacctgcc 176
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 322 gctcctagctccaagtcttccctggagcttgctatgtaaactcaccacaacccacctgcc 381

                                                                       
Query: 177 tctgcctccacctgaggact-ggcagagaggcatgcccaaatatacttcgctcttgctgt 235
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| 
Sbjct: 382 tctgcctccacctgaggactgggcagagaggcatgcccaaatatacttcgttcttgctg- 440

                                                                       
Query: 236 tt---tcctggcttcctgatacacctaaccccactgtttccttctttcctctcccctctg 292
            |   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 -tccctcctggcttcctgatacatctaaccccactgtttccttctttcctctcccctctg 499

                                             
Query: 293 tcttccctttctgcttttcttgtcttctttctta 326
           ||||||||| ||||||||||||| ||||||||||
Sbjct: 500 tcttcccttcctgcttttcttgttttctttctta 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 735
Length adjustment: 9
Effective length of query: 319
Effective length of database: 726
Effective search space:   231594
Effective search space used:   231594
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)