Query= MSMg01no399_j15.b1 MSMg01no399_j15.b1 CHROMAT_FILE:
MSMg01no399_j15.b1 PHD_FILE: MSMg01no399_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:39 2005
(545 letters)
>mm_chr4_10000481_10001425
Length = 945
Score = 907 bits (469), Expect = 0.0
Identities = 520/539 (96%), Gaps = 5/539 (0%)
Strand = Plus / Plus
Query: 7 gaattcttctatttccgccacccccccaccccccacccccgtgttttacgttgctgatgt 66
|||||||||||| || | |||| | |||||| |||||| |||||||||||| |||||
Sbjct: 212 gaattcttctatctctgtcacctc----cccccc-cccccgggttttacgttgccgatgt 266
Query: 67 aaatgcacagaaagacagcttgttagtaatgcaaactcactgtgtgccagaggatgtcac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaatgcacagaaagacagcttgttagtaatgcaaactcactgtgtgccagaggatgtcac 326
Query: 127 cttgcacctgcctcatgagtacggaaatgtatattctagaaagccaagtcttgtgaaaca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttgcacctgcctcatgagtacggaaatgtatattctagaaagccaagtcttgtgaaaca 386
Query: 187 gagagatgtcattcaatctgggcctggctgcagccctattggataatgtgtgagggggta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gagagatgtcattcaatctgggcctggctgcagccctattggataatgtgtgagggggta 446
Query: 247 aaaagattctctaaaagctctagactcaactctgtcctcaaccaacattgtgacttgtca 306
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 447 aaaagattctctaaaagctctagactcaacactaccctcaaccaacattgtgacttgtca 506
Query: 307 tacctcacttaaccgttgatccttgagtgtccaactgcaaggtaaacacactaaattatt 366
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 507 tacctcacttaaccgttgatccttgagtatccaactgcaaggtaaacacactaaattatt 566
Query: 367 tctaagacctgttctacacggagacagatggctgatttctaaagtgctggccaagcaagc 426
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctaagatctgttctacacggagacagatggctgatttctaaagtgctggccaagcaagc 626
Query: 427 gtgaagatctgtgtctgaatcgctagcgcctacaaaccaacaaagctgggctggtggctc 486
|| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttaagacctgagtctgaatcgctagcgcctacaaaccaacaaagctgggctggtggctc 686
Query: 487 atctgtgtaagtactgggagaggaaggacagtcaggtctctggtgctacttggctggcc 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atctgtgtaagtactgggagaggaaggacagtcaggtctctggtgctacttggctggcc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_j15.g1 MSMg01no399_j15.g1 CHROMAT_FILE:
MSMg01no399_j15.g1 PHD_FILE: MSMg01no399_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:40 2005
(310 letters)
>mm_chr4_10199528_10200237
Length = 710
Score = 569 bits (294), Expect = e-166
Identities = 306/310 (98%)
Strand = Plus / Minus
Query: 1 atagaaacaggcagtgaaatatttttcaggacctggagatggtatggagatatgttgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atagaaacaggcagtgaaatatttttcaggacctggagatggtatggagatatgttgggg 451
Query: 61 acaggttataattttttaggtttaaaaaataattttctgtagttttggagacagttttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acaggttataattttttaggtttaaaaaataattttctgtagttttggagacagttttta 391
Query: 121 catatggcttaggctagccttgaccttattatatagctgtggctagccttggattcctga 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 390 catatggcttaggctagccttgagcttattatatagctgtggctagccttggattcctga 331
Query: 181 tgtttctacctctgtctcccataacgtttggtataaatgttcaattttaacataggtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtttctacctctgtctcccataacgtttggtataaatgttcaattttaacataggtaaa 271
Query: 241 tactgttcatctaatgtgataaacagtgactgcagaaaatagtgttgtgttatttacctg 300
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 270 tactggccatctaatgtgataaacagtgactgtagaaaatagtgttgtgttatttacctg 211
Query: 301 aaatttagta 310
||||||||||
Sbjct: 210 aaatttagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
