BAC Information

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BAC

Clone NameMSMg01-399M05
Chromosome4 (Build37)
Map Location 70,333,937 - 70,334,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M05.T7 (MSMg01no399_m05.b1)MSMg01-399M05.TJ (MSMg01no399_m05.g1)
ACCAG499547AG499548
length711757
length of high quality
(start - end)
367 (54 - 420)144 (83 - 226)
definitionCHROMAT_FILE: MSMg01no399_m05.b1 PHD_FILE: MSMg01no399_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:52 2005CHROMAT_FILE: MSMg01no399_m05.g1 PHD_FILE: MSMg01no399_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTATCTCCCTCGTGAATGATGACTCCTCCTAACAAGA
CGAGCAAAACAGAAATTAAGTGAATAAAATCAGAACCATAGTGTATTTCT
GACTTTGTGGTTCCTCAGAATATTAATTGTCTACCAAACCAAAATGTAAT
ACTTCCTATTCTTTAATAAGAAAATGACTTACCAAACCTAGAATGAAGCT
GCAACAGCATTTAGATGCATATTTATTTACTTAATTATATTTTGTTAAAA
AATAAGAAGTGTTAAAACTGCACTAAACTTTCACAATAATAATCTGTAAA
AAAAAAAGCAAAAATTAGAGAAGTAAGTAAAAAGTAAATATTTAGAAGCA
GAAAAGGGAACACGGTCATGGTCAAATATCAGTTAGTACTAGGACATCCC
AAGCTGGTCCTTTGTCAAAGTCCATAAAACACAAATTTCTAATGTCACAA
ATGTTGTTTTAAGGAAGTATAATGAGAATTCGCTCCAGCATTCATACAGC
TAGTGAAATAATTTTGTCCACATAATTGTCACTGCATTCAATAACTTATC
GTAACACAATTTTCTAAATACAACTTGTCTATCTCACATCAAAAGTAACC
ATTATTGACAGGTTCACTCAATCACAAATATAGCGTGCATGCGCGTGTGC
GTGCTTTTTTT
TTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGGTTATTTGAACTG
TGGGTCAATCTTAAGAGGTTTTTAGACAGGAAGAATATTAGTGAGTGGTC
TAGAGACCATTCTTGTTACATTTTAGGAAAGAATGTGGCTGTATTTTAGC
TTTGTCTTAAAAATCTGTCTGAGGCAAAGTTGAAGAGTTTGGATCATTGG
TTTTTGTGGAGGAGATTTCAAGGTTACCTAATATTGATCGCGTCATATGG
TGATTAGTGGCCACTTGCACCGATATCTTCTCTGATTAACAGCAAGCTGA
GCCTGGTTTAACACTTTTTACTCTTTTTTCACCATAATTGGAGCACCCTG
AACTGCATTGTAACTATTTACTATGCCTATCCCTTACCCTCCCTTTTTTT
TCCTATACGTTCTGATGCTCAATACCGTTCTAGAATGTGCTGATTTCCTA
CTCCATGTCTTTATTTCTCCGTATCCTCTTACCTGTTTTCCTTTACCCCC
CCCCCCACCTTTTTCTATTCCCTCCTTTTCTCCTTTTTTTACGCACCCTT
TTTTTTTTTGACTGCCCCCTCTTTTATTTTTTTATTATATCCTTTTTACG
TGTTATTTCGCTCCTTTTTTTGTACCCCCTTTTTCTTTTTTATCTTTTTT
TATCCTTTCCGCTTCCCCCCCTCTTATCCCCCTTTTTTTCTCCCCCCTCC
CCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m05.b1 MSMg01no399_m05.b1 CHROMAT_FILE:
MSMg01no399_m05.b1 PHD_FILE: MSMg01no399_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:52 2005
         (367 letters)



>mm_chr4_70333886_70334651
          Length = 766

 Score =  650 bits (336), Expect = 0.0
 Identities = 357/364 (98%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatctccctcgtgaatgatgactcctcctaacaagacgagcaaaacagaaatt 64
           |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 414 gaattcctatct-ccttgtgaatgatgactcctcctaacaagacgagcaagacagaaatt 356

                                                                       
Query: 65  aagtgaataaaatcagaaccatagtgtatttctgactttgtggttcctcagaatattaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aagtgaataaaatcagaaccatagtgtatttctgactttgtggttcctcagaatattaat 296

                                                                       
Query: 125 tgtctaccaaaccaaaatgtaatacttcctattctttaataagaaaatgacttaccaaac 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 tgtctaccaaaccaaaatgtaatacttcttattctttaataagaaaatgacttaccaaac 236

                                                                       
Query: 185 ctagaatgaagctgcaacagcatttagatgcatatttatttacttaattatattttgtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctagaatgaagctgcaacagcatttagatgcatatttatttacttaattatattttgtta 176

                                                                       
Query: 245 aaaaataagaagtgttaaaactgcactaaactttcacaataataatctgt-aaaaaaaaa 303
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 175 aaaaataagaagtgttaaaactgcacttaactttcacaataataatctgtaaaaaaaaaa 116

                                                                       
Query: 304 agcaaaaattagagaagtaagtaaaaagtaaatatttagaagcagaaaagggaacacggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 115 agcaaaaattagagaagtaagtaaaaagtaaatatttagaagcagaaaagggaacacggc 56

               
Query: 364 catg 367
           ||||
Sbjct: 55  catg 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 766
Length adjustment: 9
Effective length of query: 358
Effective length of database: 757
Effective search space:   271006
Effective search space used:   271006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)