BAC Information

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BAC

Clone NameMSMg01-399M20
Chromosome4 (Build37)
Map Location 149,817,912 - 149,818,160
singlet/doubletsinglet
Overlap geneRere
Upstream geneRbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneSlc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M20.T7 (MSMg01no399_m20.b1)MSMg01-399M20.TJ (MSMg01no399_m20.g1)
ACCAG499577AG499578
length730765
length of high quality
(start - end)
249 (72 - 320)76 (117 - 192)
definitionCHROMAT_FILE: MSMg01no399_m20.b1 PHD_FILE: MSMg01no399_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005CHROMAT_FILE: MSMg01no399_m20.g1 PHD_FILE: MSMg01no399_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGA
ATTCAGTAGTCTTACAGTCAGCCTCAGAGCGCCCCAAAAGATTCTGGGAA
TGTGGGTTGATAACCAGCCGACTGAGTGAAGTACAACCATGAACATATCA
TAGGTAGGAGAAAACCATTGTTCCGAGAGGGCTGCGGGTATAAATTCTGT
AATAGGGGGCTTGCCGAACAGGTCAGGCCCTGGTTCTAAGTCTCTCCCAG
TCCTGCCTCAAGAATTGCTGGTTTGCTTCTACTGACTTCCCCAACATTTA
AAGTAAGTGTAATCTTTGTGCTTACTGTGAATGGCAATTTATAAGTTAAT
TTCAAATCAAACTTCAAAATTAAAAGAACCCTCAGAATCAACATTAATTC
AGTTAGGGTAGGCTGGCACCCACCTCTGAAGTAAATAGTTGCCTGTGATA
ACTGGATGGCTTTAGCTCAAGCTGTTGGGAGCACGTCCATGTCATGTGCC
ATCTACACTGTCCCCACGCTGGGCTCTATTGCTCTTTATTTTTACCACTG
TGACTGTGTTATTTGTATGAAGTGATCTGGCCTTTGTCTGGCTGTGTGCT
GCTGCATGGTCAGTTGCACTGGCTAGCATTTGCCTGCTACCGCGCGTTTG
TTTTTATTCTCCAACCTCTCCCCCCCCCCCTCTTCTGTATAAGCTAGGCT
AGCCTTCAATTCTCCGAGATTTGCTGTCTN
ATGCAGTGGGAGGCCTGGCGGCCGCTGGTTTCACATAAAGGTGACCTATA
GAAGTTTCCCAAAATTCAACTTTGTGACATGGCTGGAAAAAATAGATCAG
AATAGTCGTCTGTGCCAAGAAAAAAAGACTTCTAAAATTATTTATTTACA
GATGTAAAAAGCCATGCTGCAGAACTGTCTCAAATTACGAAGATTTCCTA
CAATGTATTAAAATAAAAGATTTTTCAAAAATTACAGCTCTTGCATTTCA
AACTCATATGCCGCCTCTCTGCAAACCCTGCGGGTTCCAGAGCCCACGTG
CCTCAGTGTCTGTTTTTTCTTCGAAGGTTGCGAACGTTCTCTAGTATCTA
CTGATAAATCAACGACAACAGAACTCAAGTCAAATCCCAAGCTCGCTGTC
ATGCTTTCTGCGCCTCATTCCATCCCACTATTCTCCATGTTTCTGGGCGA
CTGTCATGCTATCAGACCCACATCACTCTCAGGATTTCCTCTCTTCTCAC
TAACTCTATTATGTTTATGTTGTTTCACTCGCGTTCTTTATTTATATTCC
ACCCTCTTTTATATGATATTCCCCCCTTTGCTCTTTGTATTCCCTACCAC
CATGTTTCTGTCCTTGTTTTCTGCCCCCCTTTCCATTCGGCTTTCTCCCC
GCCAGCCCATTTTTTCATCTTATATTACACATCTTATNACCTTCGTTCCC
GCCTCCTCTTCCTCTCCCTTTAGCTTTAATCTTGGCCGATTTATTCTTAT
TATTCCCCACCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m20.b1 MSMg01no399_m20.b1 CHROMAT_FILE:
MSMg01no399_m20.b1 PHD_FILE: MSMg01no399_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:54 2005
         (249 letters)



>mm_chr4_149817712_149818360
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcagagcgccccaaaagattctgggaatgtgggttgataaccagccgactgagtgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcagagcgccccaaaagattctgggaatgtgggttgataaccagccgactgagtgaag 260

                                                                       
Query: 61  tacaaccatgaacatatcataggtaggagaaaaccattgttccgagagggctgcgggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaccatgaacatatcataggtaggagaaaaccattgttccgagagggctgcgggtat 320

                                                                       
Query: 121 aaattctgtaatagggggcttgccgaacaggtcaggccctggttctaagtctctcccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattctgtaatagggggcttgccgaacaggtcaggccctggttctaagtctctcccagt 380

                                                                       
Query: 181 cctgcctcaagaattgctggtttgcttctactgacttccccaacatttaaagtaagtgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcctcaagaattgctggtttgcttctactgacttccccaacatttaaagtaagtgta 440

                    
Query: 241 atctttgtg 249
           |||||||||
Sbjct: 441 atctttgtg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)