BAC Information

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BAC

Clone NameMSMg01-399O06
Chromosome4 (Build37)
Map Location 108,753,106 - 108,753,347
singlet/doubletsinglet
Overlap geneOsbpl9
Upstream geneScp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1
Downstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399O06.T7 (MSMg01no399_o06.b1)MSMg01-399O06.TJ (MSMg01no399_o06.g1)
ACCAG499644AG499645
length726756
length of high quality
(start - end)
244 (76 - 319)---
definitionCHROMAT_FILE: MSMg01no399_o06.b1 PHD_FILE: MSMg01no399_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:01 2005CHROMAT_FILE: MSMg01no399_o06.g1 PHD_FILE: MSMg01no399_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAGAGAATCC
GCGGAATTCCAGGCTTTTACCGCTCTGTATAGCAAATTCCAGGCTAGCCA
GGGCTATGTAATAAAACCCTGTCTCAAACAAACAAACAAAAGTAGCATGT
TAATAAATGGTAAAACCTCCCCAGTATTATAGGCCTATATACCCCAAAGT
ATACCCAAAGTAAGGCCGAACTTAGTTTACTCACTACCTTTTGTGGAAAG
AGGGAAAAACACGGTTTTCTTGTTTATACTTAAACACTAGAAAAAAAAAA
AAACTACTTAGTACTTACTGGGTTATGCTGTCTTTAAAACAGCTACATAA
GCGGAAGCAAGCCCTTTCTCACTGCTCACACAGTATTCCTCGTTTTGTTT
GGAGTTCGCTGTTGCTGTCTACCACTGCAAATTTATCCCTTGGCCCTATG
GGTGGTAAGCATTTGCTTAACTCCTTAGTTGCTTATAAGAACCACCCTCT
ATTATATATCAGAGTTTTCCCAGGGCCAGGGTCACGCTGGATAAGTCTGC
CCCAGATGTTCCTTTTCATTCCAATAAGCATTCAAGATAAGCTCTGCTTT
GTACATGTCACCGCCTGCTGTCATCTTTCTCTTGGGGTCCTCTGTTCCGC
CCTTTCATGTGTTGCTTGTGTTGAATGTTAACTGATAGACCCGCTAGAAA
CATTAGTTGTCCTGCCTATCCACAAA
CGCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAATGACAAGCACGAGTCGGTTT
AGGAGGGTTGGGGCTATAGCTGCTCCAGGCAAAGGAAACAGGAACTTTTC
ATAATAGGCTGTTGAGGCCGGACTTGGCTGCCATAGTCTTTCCTGCTAGT
CTGTACTCACCATACAGACGTATTATGATCTTGTGAGCTCTGGTCTACCG
AATAGCCTGGCCTACAGAGCGAGTTCCTGGTCAACCAGGGTTGTTACCCA
GATAAACTGTCTCAAAAAAAAGTCCCTTCCATAACAACAATTTATCCTGT
TGCCTGGGGACTTAACGTGCTTTTCAAGCAGGAAACTCAACTCGTATATT
ACTGTCCTGATCCCCGTCCTCCCCTTCTACTTTTTTTGTTTTAACTTACG
TAGCCTGCTACCTACGCTCCCCTTTATCTCCTCGTGTTCTTCCCTTGTTC
TCCCCCTGCTTTTGCCTATTTGCCTTGTTCGGCGAGTTTCTTTTGTTTCT
CCTCCCCCCACCATTGTTCTTATTCTTACCCCCCCTTTCCGATTCTTGTT
CACCCCCCCCAATATCCTTTTAATTTATTCGCCCCTTTTTCCTTGCTTTC
CCTGCCCTCCCATTTTTCGCCGCCCTATTCACTATTTTTACTCGCCCCCC
CTTCCTCTAACCCCCCCGTACTTCCTCCTCCCCTTTTTTCTTTTTTTCCC
CCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_o06.b1 MSMg01no399_o06.b1 CHROMAT_FILE:
MSMg01no399_o06.b1 PHD_FILE: MSMg01no399_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:01 2005
         (244 letters)



>mm_chr4_108752845_108753488
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatagcaaattccaggctagccagggctatgtaataaaaccctgtctcaaacaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtatagcaaattccaggctagccagggctatgtaataaaaccctgtctcaaacaaacaa 444

                                                                       
Query: 61  acaaaagtagcatgttaataaatggtaaaacctccccagtattataggcctatatacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaaaagtagcatgttaataaatggtaaaacctccccagtattataggcctatatacccc 384

                                                                       
Query: 121 aaagtatacccaaagtaaggccgaacttagtttactcactaccttttgtggaaagaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagtatacccaaagtaaggccgaacttagtttactcactaccttttgtggaaagaggga 324

                                                                       
Query: 181 aaaacacggttttcttgtttatacttaaacactagaaaaaaaaaaaaactacttagtact 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 aaaacacggttttcttgtttatacttaaacactagaaaaaaaaataaactacttagtact 264

             
Query: 241 ta 242
           ||
Sbjct: 263 ta 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)