Query= MSMg01no400_c15.b1 MSMg01no400_c15.b1 CHROMAT_FILE:
MSMg01no400_c15.b1 PHD_FILE: MSMg01no400_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:23 2005
(486 letters)
>mm_chr4_84288107_84288990
Length = 884
Score = 872 bits (451), Expect = 0.0
Identities = 476/487 (97%), Gaps = 9/487 (1%)
Strand = Plus / Minus
Query: 4 gaattctctgattagc---ac-tcattgtttttctaagaaggagtggacgggagaaggca 59
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattctctg---agcaagacatcattgtttttctaagaaggagtggacgggagaaggca 647
Query: 60 gtggaattgcctgaggtcaggcaggtgggacgtcatagagtctggcttagtttgaccgga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtggaattgcctgaggtcaggcaggtgggacgtcatagagtctggcttagtttgaccgga 587
Query: 120 aggcttgcacatttttctctttgttttctgcggcaggcacacattacaagccaacctggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggcttgcacatttttctctttgttttctgcggcaggcacacattacaagccaacctggg 527
Query: 180 gaaaggagtaaagagaccctagttttcagaagtattgatctgtttttggaatgtgtgaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaaaggagtaaagagaccctagttttcagaagtattgatctgtttttggaatgtgtgaaa 467
Query: 240 taaaagaggttttggaaagtagaagtttgtaacatttatttctttaccagtgtagtgtag 299
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 466 taaaagaggttttggaaagtagaagtttgtaacattaatt-ctttaccagtgtagtgtag 408
Query: 300 tttgagtgaaaatttcatgctaataatatcagaattattattgttgttgctattatttct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 tttgagtgaaaatttcatgctaataatatcagaattattattgttgttgctattattttt 348
Query: 360 gcttaggaattcctcaaaacccccagataggaagcaggggccaccaaatgtagttttgtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcttaggaattcctcaaaacccccagataggaagcaggggccaccaaatgtagttttgtg 288
Query: 420 gttagggcagacaaatttgaagggccttttagctgaggtcagatggataaagagaaatga 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 287 gttagggcagacaaatttgaagggccttt-agctgaggtcagatggataaagagaaatga 229
Query: 480 agtcacc 486
|||||||
Sbjct: 228 agtcacc 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space: 416024
Effective search space used: 416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_c15.g1 MSMg01no400_c15.g1 CHROMAT_FILE:
MSMg01no400_c15.g1 PHD_FILE: MSMg01no400_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:23 2005
(471 letters)
>mm_chr4_84137634_84138504
Length = 871
Score = 872 bits (451), Expect = 0.0
Identities = 466/471 (98%)
Strand = Plus / Plus
Query: 1 actttctgattttgatgtattgagttcttttcttgcctcttcttgcccatagatatataa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 201 actttctgattttgatgtattgagttcttttcttgcctcttcttacccatagatgtataa 260
Query: 61 ttcgggtctgctgtattctttcaaaggaagaattggcagggcagttgctgttacttagga 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttcgggtctgctgtattctttcaaaggaagaactggcagggcagttgctgttacttagga 320
Query: 121 taagtatgtaatctccttgactttctcttgttgggcaaactgcccagtgaatatcaattt 180
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactatgtaatctctttgactttctcttgttgggcaaactgcccagtgaatatcaattt 380
Query: 181 ttttagagctacaaatatggttttaatagattcacagattttaaattattataattcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagagctacaaatatggttttaatagattcacagattttaaattattataattcagg 440
Query: 241 gcacgtctctcccagggcgagcaaataactcataacaatccatgtagatgcaaaggagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacgtctctcccagggcgagcaaataactcataacaatccatgtagatgcaaaggagat 500
Query: 301 gacaattgatcaatctgcatgtgagtacattgacagagttactgctcctcttttctctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaattgatcaatctgcatgtgagtacattgacagagttactgctcctcttttctctcc 560
Query: 361 aaaccctccccacaacactcagacaatttcacatggaaaaaatgcctgtctatgggagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccctccccacaacactcagacaatttcacatggaaaaaatgcctgtctatgggagtt 620
Query: 421 caaattagtcataatacccactttggggactgaagaacacttactgtaaat 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaattagtcataatacccactttggggactgaagaacacttactgtaaat 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
