NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCC
GCGGAATTCTCCATAGAGTACTCTCAAATGACCAAGAAGCATCTAAAGAA
ATGTTCAATGTCTCTAGTCATCAGGGAAATCCAAATCAACAATGATTCTA
AGATTCTACCTTATACCCATCAGCATGGCTAAGACCAAAAACTCAAAGGA
CAGAACATGCTGGGAAGGTTGTGAAGCAACAGGAGCACTCTTCTACTGCA
GGTGGGATTGCAAAATTGTGCAAACACTCTGGAAATCAATTTGGTGGTCT
CTCAGAAGTTTGGGGATAGTTCTCAAGACTATCTATACCACTCCTCCTAT
ATATGGTGTACTCAAAAGATGCTCCATCATAACACAATGACTCTTGCTCA
TCTATGTTCCTAGCATCTTTATTCATAATAACCAAAAATAGAAAACAACA
TAGATGTCCCTCAACTGAAAAATGGATAAAGGAAATGTGGCTCATTTACA
TAATGGTATATTATGTAGTCATTAANAGTATAGACAGGCAGATGGATGGA
ACTAGNAAGTATTGCCCTGCATGNAGTAACCCAGAAGAACTGCATGGNAT
GTATTCATTTATAGTGAAAATTAGCCCTAAAGTAAGGGATACCCACCCAT
TATCCATAAACCCCAGAAGCCCACTAACAAAAGGCCCCAGGAAGGAAGAA
TGGAACTTTCTCTCAACGGGAGAAAAAAAAAATTGGTAAAATTTAAGAAA
GAAAAAAAACTGTTTGTGAAAGGGAAAAAATATAGAATATCTTA

NNNNCCACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTAAGATAATGAA
GCAATTTTTTTTCACCAGCTCATAGTGTTCAAAACACAATAATGTTCATT
TACATATATCAACACCAGAGGGAAAAGCCTTAGGTTAAATGCCATCAGAT
TAATCTGGAACACTATCTTTTACGGCACATGTGAAAGATTTGGGCATTTT
CAACATTTCAATTTTCAAAATCATTTTATATGTACAAAAGTATGATTTTA
GAAAATAAAGTTTTATAAATAATAATTAAAATTTGTGTTCATCCTAAAAT
CATATCTTTTTACCCTATCTAACAATAGATTATTTAACTATAGATACATA
TGAAAATAAGTTCTAGATATATTTCTATTAAATAGCTGATTTTTAAATTA
CATACCATAATATTAACATTTGTACTAAAATTACAGAATATAAAAAGGTA
ATAGGAAAAACATATGACTAATACTAATTCTAAAAAATGTTTTCACTTTA
CTACTATCCTAATAGTTTTTCAAGCTCACATAGCTAACTTCATTTTTATA
AAGAGCTTTTGGTAATTCCAGGGCATGATTACAACTATAAAAAGGGAAAT
TTATTTTTTTAACATCCCCCCGGTTTTAAATTTTGGAGAAATTATAATTT
TCATAAATGGGGGAGATGGGCCGCGAAAAGAAAATAAAACCCTTTAAATT
GGAGTTGTGTTGGGCACAATTAAGGGGG

Query= MSMg01no400_f24.g1 MSMg01no400_f24.g1 CHROMAT_FILE:
MSMg01no400_f24.g1 PHD_FILE: MSMg01no400_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:40 2005
         (448 letters)



>mm_chr4_39288173_39289024
          Length = 852

 Score =  830 bits (429), Expect = 0.0
 Identities = 444/451 (98%), Gaps = 4/451 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattaagataatgaagcaattttttttcaccagctcatagtgttcaaaacacaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaattaagataatgaagcaattttttttcaccagctcatagtgttcaaaacacaataat 260

                                                                       
Query: 61  gttcatttacatatatcaacaccagagggaaaagccttaggttaaatgccatcagattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcatttacatatatcaacaccagagggaaaagccttaggttaaatgccatcagattaa 320

                                                                       
Query: 121 tctggaacactatcttttacggcacatgtgaaagatttgggcattttcaacatttcaatt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggaacactatcttttatggcacatgtgaaagatttgggcattttcaacatttcaatt 380

                                                                       
Query: 181 ttcaaaatcattttatatgtacaaaagtatgattttagaaaataaagttttataaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaaatcattttatatgtacaaaagtatgattttagaaaataaagttttataaataat 440

                                                                       
Query: 241 aattaaaatttgtgttcatcctaaaatcatatctttttaccctatctaacaatagattat 300
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaaaatttgggttcattctaaaatcatatctttttaccctatctaacaatagattat 500

                                                                       
Query: 301 ttaactatagatacatatgaaaataagttctagatatatttctattaaatagctg----a 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 501 ttaactatagatacatatgaaaataagttctagatatatttctattaaatagctgtctga 560

                                                                       
Query: 357 tttttaaattacataccataatattaacatttgtactaaaattacagaatataaaaaggt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttaaattacataccataatattaacatttgtactaaaattacagaatataaaaaggt 620

                                          
Query: 417 aataggaaaaacatatgactaatactaattc 447
           |||||||||||||||||||||||||||||||
Sbjct: 621 aataggaaaaacatatgactaatactaattc 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 852
Length adjustment: 10
Effective length of query: 438
Effective length of database: 842
Effective search space:   368796
Effective search space used:   368796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)