Query= MSMg01no400_g17.b1 MSMg01no400_g17.b1 CHROMAT_FILE:
MSMg01no400_g17.b1 PHD_FILE: MSMg01no400_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:43 2005
(476 letters)
>mm_chr4_18254908_18255781
Length = 874
Score = 772 bits (399), Expect = 0.0
Identities = 456/485 (94%), Gaps = 20/485 (4%)
Strand = Plus / Minus
Query: 1 tagataattcgggactgtttacatggatttgatatctaagtccacaatgat-------tg 53
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Sbjct: 515 tagataattcggaactgtttacatggatttgatatctaagtccacaatgatatacatat- 457
Query: 54 atatatatatatatatatatata--tatatatacatatatatatatatatattcatttca 111
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Sbjct: 456 atatatatatatatatatatatatgtatatatatatatatatatatatatattcatttca 397
Query: 112 ttaaaaggtgggagacagggacaagtagtccatgcaagctcacactagagactcttttta 171
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Sbjct: 396 ttaaaaggtgggaaacagggacaagtagtccatgcaagctcacactagaga--cttttta 339
Query: 172 tgtctacttagccagagatgacactgggttgtccaatgagaaatgtagtttctattctga 231
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Sbjct: 338 tgtctacttagccagagatgacactgggttgtccagtgagaaatgtagtttctattctga 279
Query: 232 gagtctatatactcagctgaaaatcttgtgatctgtctgaaaggaagcaaacaaacaaca 291
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Sbjct: 278 gagtctatatactcagctgaaaagcaagtgatctgtctgaaaggaagcaaacaaacaaca 219
Query: 292 agtaatcaatcaatcaatcaatcaatcaatcaaacaaaccaaaaccagaatagtttcttc 351
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Sbjct: 218 agt--------aatcaatcaatcaatcaatcaaacaaaccaaaaccagaatagtttcttc 167
Query: 352 agccagcccacagataccttgtatacagaggacaacttcatattcatcagcattatgaat 411
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Sbjct: 166 agccagcccgcagataccttgtatacagaggacaacttcatattcatcagcattatgaat 107
Query: 412 ggaagcaattctttgagatattacaagatgtttatatgaataagacagtataatattaac 471
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Sbjct: 106 ggaagcaattctttgagatattacaagatgtttatatgaataagacagaataatattaac 47
Query: 472 agtat 476
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Sbjct: 46 agtat 42
Score = 89.7 bits (46), Expect = 4e-22
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 58 atatatatatatatatatatatatatacatatatatatatatatat 103
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Sbjct: 405 atatatatatatatatatatatatatacatatatatatatatatat 450
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 atatatatatatatatatatatatatat 81
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Sbjct: 433 atatatatatatatatatatatatatat 460
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 atatatatatatatatatatatatatat 83
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Sbjct: 433 atatatatatatatatatatatatatat 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 4
Length of query: 476
Length of database: 874
Length adjustment: 10
Effective length of query: 466
Effective length of database: 864
Effective search space: 402624
Effective search space used: 402624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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