BAC Information

Click to search

BAC

Clone NameMSMg01-400N10
Chromosome4 (Build37)
Map Location 109,444,329 - 109,644,018
singlet/doubletdoublet
Overlap geneFaf1
Upstream gene3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400N10.T7 (MSMg01no400_n10.b1)MSMg01-400N10.TJ (MSMg01no400_n10.g1)
ACCAG500365AG500366
length789782
length of high quality
(start - end)		526 (45 - 570)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no400_n10.b1 PHD_FILE: MSMg01no400_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:16 2005CHROMAT_FILE: MSMg01no400_n10.g1 PHD_FILE: MSMg01no400_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,444,329 - 109,444,850)(109,643,770 - 109,644,018)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGCACCGCGGA
ATTCTTTTATCTTATCTTTCTCTTATCTTGCCATGGCATCTATGAGATTA
TAGTCATGATCTTCAGTAGGCTCTGGGAATCCAAACTCAAGTCCACACAC
CTACAGAACATCACTTTACCTGCTGAGCCATCTTCCCAGCTCCTAAAATA
CATTTTAATTCTACCTTTAAGTCATTGCAATTTTAATTTTTTTTCTAAGA
CATCCTCTATATCTATAATTGTGTGTGTTTTAGTAAACTGTTTTCTGACA
ATTCTGTGTGATATTTATTGTCATCTAAATTTAAAATAATTTATAATTTA
AAAAAATTTTGAAAAGATAAACATGTTTAAATCTTAACACCGAAGTGTTA
AGTACTACAGATAGCAAGCTACTTTGAAATTGTGTTTTGTGTTTTATATA
CAATATTTACAGTTGACCAGACTATTGGAAATCCCTGTCCAAAAACCAAA
TATCTAATATGTATTAAATATGTAATTAATCTACAATCTACTATCATAAG
CAGAGTTAAATACACATCAATGAGCAACATAATTTTTAAGTTTATTGGCT
TCCTATTTCAGNCATTAGATTGAATACCTTCCTTGGAAAGATTAAGACAG
AAAATATTGGGCATGCCTTTTCCTTAGGTTAAAGGAAAAAACAAAAACTC
CCCCCCGGTCTAATTAAGGACAAGGGACCCCTTTTTCTGAAGGGGGATTT
TTGGGAAACCATCACTTGGATTTTTATCTGGAAAAAGCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACAGCAGGTAGCATCTAGGACACAGACC
AAACTGAAGAAGGAGGGATGAATTTGGACAGAAGCAAAATGCGTGTAAGC
CACAGGTCACCTTTCTTCTGTTTTTATTCCTCCTGTATTATTAATTTTTA
ACTCTGACCCCCACCCTGCATTTCCTGTTGTGTAGAAGAGTGTGGCTGTT
AGGACCTGGCAGCTCCTACTTTCCTGACTTCCATAGGGTCTGCCAGGCCC
ATCCATCTCCGATTTGGAACCTTTTTTCCTGCATTAGCTGATATAGATTC
CAACATGCTGCTCTTTCTCCCCCAGGTTTCCTTCCAATCCAGTTTCTGAG
ATGCCTCAACTGTCTCTTGTCAGTGTGGCCCATGCTGACTCTGGTGGCAT
GTGTGTGTGTCCCAAGTGCCTCTGTGTCATCCTATCTGAAACCACACAAT
CACCTGTTGTCATCTCCAGGTACTATTAGAGGAAACTAAGATGGACCTAT
CACTAGGAAACAGAGAAGTGATCCACCAGGATCACAGGGCAGGTGTGGGG
ATGATTGAGAATGGTTTTTTCCNCCAGAAAATGGATTGTGCTTTTCTATT
AGACCCCTGAATTTTTTTTTTTTTTTTGACCCCCTTCTCTGGGGAAATAA
ATTGGGTTTCTTTTTTATTATAACTTCCNCTTTCCTTTTACTTTTTTTTA
CTAGTTTCTTCTCGCCGGTTATCTTTACGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_n10.b1 MSMg01no400_n10.b1 CHROMAT_FILE:
MSMg01no400_n10.b1 PHD_FILE: MSMg01no400_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
         (526 letters)



>mm_chr4_109444125_109445050
          Length = 926

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttatcttatctttctcttatcttgccatggcatctatgagattatagtcatg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttatcttatttttctcttatcttgccatggcatctatgagattatagtcatg 264

                                                                       
Query: 65  atcttcagtaggctctgggaatccaaactcaagtccacacacctacagaacatcacttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcttcagtaggctctgggaatccaaactcaagtccacacacctacagaacatcacttta 324

                                                                       
Query: 125 cctgctgagccatcttcccagctcctaaaatacattttaattctacctttaagtcattgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgctgagccatcttcccagctcctaaaatacattttaattctacctttaagtcattgc 384

                                                                       
Query: 185 aattttaattttttttctaagacatcctctatatctataattgtgtgtgttttagtaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattttaattttttttctaagacatcctctatatctataattgtgtgtgttttagtaaac 444

                                                                       
Query: 245 tgttttctgacaattctgtgtgatatttattgtcatctaaatttaaaataatttataatt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttctgacaattctgtgtgatatctattgtcatctaaatttaaaataatttataatt 504

                                                                       
Query: 305 taaaaaaattttgaaaagataaacatgtttaaatcttaacaccgaagtgttaagtactac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaaaaattttgaaaagataaacatgtttaaatcttaacaccgaagtgttaagtactac 564

                                                                       
Query: 365 agatagcaagctactttgaaattgtgttttgtgttttatatacaatatttacagttgacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatagcaagctactttgaaattgtgttttgtgttttatatacaatatttacagttgacc 624

                                                                       
Query: 425 agactattggaaatccctgtccaaaaaccaaatatctaatatgtattaaatatgtaatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agactattggaaatccctgtccaaaaaccaaatatctaatatgtattaaatatgtaatta 684

                                                     
Query: 485 atctacaatctactatcataagcagagttaaatacacatcaa 526
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atctacaatctactatcataagcagagttaaatacacatcaa 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_n10.g1 MSMg01no400_n10.g1 CHROMAT_FILE:
MSMg01no400_n10.g1 PHD_FILE: MSMg01no400_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
         (249 letters)



>mm_chr4_109643570_109644218
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaggtagcatctaggacacagaccaaactgaagaaggagggatgaatttggacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acagcaggtagcatctaggacacagaccaaactgaagaaggagggatgaatttggacaga 390

                                                                       
Query: 61  agcaaaatgcgtgtaagccacaggtcacctttcttctgtttttattcctcctgtattatt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 agcaaaatgcgtgtaagccacaggtcacctttcttctgtttatattcctcctgtattatt 330

                                                                       
Query: 121 aatttttaactctgacccccaccctgcatttcctgttgtgtagaagagtgtggctgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatttttaactctgacccccaccctgcatttcctgttgtgtagaagagtgtggctgttag 270

                                                                       
Query: 181 gacctggcagctcctactttcctgacttccatagggtctgccaggcccatccatctccga 240
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 269 gacctggcagctcctacttttctgacttccatagggtctgccaggcccacccatctccga 210

                    
Query: 241 tttggaacc 249
           |||||||||
Sbjct: 209 tttggaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |