Query= MSMg01no401_a06.b1 MSMg01no401_a06.b1 CHROMAT_FILE:
MSMg01no401_a06.b1 PHD_FILE: MSMg01no401_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:32 2005
(364 letters)
>mm_chr4_55263403_55264166
Length = 764
Score = 704 bits (364), Expect = 0.0
Identities = 364/364 (100%)
Strand = Plus / Minus
Query: 1 cacacacacacacacacacacacacacacacacacacacacacacacaaatacttggctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cacacacacacacacacacacacacacacacacacacacacacacacaaatacttggctc 413
Query: 61 ttcccagtttgataatagaagtgaatattttcctattcatatactcttctgagtgcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttcccagtttgataatagaagtgaatattttcctattcatatactcttctgagtgcacac 353
Query: 121 cagagtcttatgcatttctgaatcccaaccagagatgcagccaaaccctcttcttttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagagtcttatgcatttctgaatcccaaccagagatgcagccaaaccctcttcttttcat 293
Query: 181 ctgcccctgagagagacactgagcaaccctgccaccctgcaggctttatttggttttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctgcccctgagagagacactgagcaaccctgccaccctgcaggctttatttggttttgca 233
Query: 241 acactaaggacgagtccaaagcttcacacatggtaacccagcatcctgctgctaagctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acactaaggacgagtccaaagcttcacacatggtaacccagcatcctgctgctaagctaa 173
Query: 301 atctccagccccattcaccagttttaagcacttgtaatccacctttcccccttttacccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 atctccagccccattcaccagttttaagcacttgtaatccacctttcccccttttacccc 113
Query: 361 gtgg 364
||||
Sbjct: 112 gtgg 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space: 268025
Effective search space used: 268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_a06.g1 MSMg01no401_a06.g1 CHROMAT_FILE:
MSMg01no401_a06.g1 PHD_FILE: MSMg01no401_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:32 2005
(584 letters)
>mm_chr4_55126169_55127152
Length = 984
Score = 1093 bits (565), Expect = 0.0
Identities = 579/589 (98%), Gaps = 10/589 (1%)
Strand = Plus / Plus
Query: 1 aattctggcagggaggggaattaaacaatttggagcttatcatggacagttttaagtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctggcagggaggggaattaaacaatttggagcttatcatggacagttttaagtcag 260
Query: 61 cgcactttactatttgctatttgaagaaacgaagtacctcattctggcctccagttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcactttactatttgctatttgaagaaacgaagtacctcattctggcctccagttctct 320
Query: 121 catatactccttttcatttatgtattctttctaccatgtctgggtccttatgcaggacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatactccttttcatttatgtattctttctaccatgtctgggtccttatgcaggacac 380
Query: 181 aagggacaccaaaggacatgtgacatgatttctgtaatctggaaatttactgtcttgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggacaccaaaggacatgtgacatgatttctgtaatctggaaatttactgtcttgggt 440
Query: 241 agggaagtttttt-----gaagtaaggcctgtaaaacaaagtacaataaactgtggcaaa 295
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaagt-----agcaagaagtaaggcctgtaaaacaaagtacaataaactgtggcaaa 495
Query: 296 gaggtttctgggctggtgggggagggagaaataagaagccctgagggatgtttagtgggg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaggtttctgggctggtgggggagggagaaataagaagccctgagggatgtttagtgggg 555
Query: 356 actgagtctgagcctctgggcctgggccagcccttgagacagatcccctgctccatcatc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 actgagtctgagcctctgggcctgggccagcccttgagacagatcccctgctccatcatc 615
Query: 416 agttttctctgaaggaaaatctcatggttaagccctaaccagttgagttgcgccatcttt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agttttctctgaaggaaaatctcatggttaagccctaaccagttgagttgcgccatcttt 675
Query: 476 ctgtccttggtgatagatgcaaaagacaggacatggttgaaaaaaatgatcaaaggtgtc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctgtccttggtgatagatgcaaaagacaggacatggttgaaaaaaatgatcaaaggtgtc 735
Query: 536 tcaccatgaaagcaagtgttagggtactaagagaaagagaactggtgtc 584
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcaccatgaaagcaagtgttagggtactaagagaaagagaactggtgtc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
