Query= MSMg01no401_c22.b1 MSMg01no401_c22.b1 CHROMAT_FILE:
MSMg01no401_c22.b1 PHD_FILE: MSMg01no401_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:45 2005
(494 letters)
>mm_chr4_85230965_85231858
Length = 894
Score = 917 bits (474), Expect = 0.0
Identities = 486/490 (99%)
Strand = Plus / Minus
Query: 5 gaattcccatcgtataacttaagacaaatgagtccccttgaataattaactccctatatg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gaattcccatcgtaaaacttaagacaaatgagtccccttgaataattaactccctatatg 635
Query: 65 tgtgcacaggcaactcatgaactgagtcaatcatttaaagtgagccctgcaattctacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtgcacaggcaactcatgaactgagtcaatcatttaaagtgagccctgcaattctacac 575
Query: 125 acactttaatagtctcatttcctgcctagtttgattcttagttttattcataggcttcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acactttaatagtctcatttcctgcctagtttgattcttagttttattcataggcttcat 515
Query: 185 gtctgacagagagaggcatgacttataaatatttaaatgacatttgattgaatgcagtat 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtctgacagagagagccatgacttataaatatttaaatgacatttgattgaatgcagtat 455
Query: 245 aatttaagactttaccaaaaatctaatgtcatatcacactagtgatgattatacaaaact 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 454 aatttaagactttaccaaaaatctaatgtcatatcacactagtgatgatcatacaaaact 395
Query: 305 ggaagaaaagctgtcaaacaacatgaaagggatgtgcatactgatatgtaattattcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggaagaaaagctgtcaaacaacatgaaagggatgtgcatactgatatgtaattattcaca 335
Query: 365 cagaaaatgcatatcctgtgactgaattgtatcttttttcttctgacaaacatctgagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagaaaatgcatatcctgtgactgaattgtatcttttttcttctgacaaacatctgagca 275
Query: 425 tcaagccattttattccaagggtgtatgacaacagtgagcctttctcagttgacttaata 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 tcaagccattttattccaagggtgtatgacaacactgagcctttctcagttgacttaata 215
Query: 485 ggagtcaaga 494
||||||||||
Sbjct: 214 ggagtcaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_c22.g1 MSMg01no401_c22.g1 CHROMAT_FILE:
MSMg01no401_c22.g1 PHD_FILE: MSMg01no401_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:45 2005
(494 letters)
>mm_chr4_85152774_85153664
Length = 891
Score = 857 bits (443), Expect = 0.0
Identities = 481/495 (97%), Gaps = 5/495 (1%)
Strand = Plus / Plus
Query: 1 acattctgactgtggaaatactggccttaggaatcctggtgtatatatagaaccagtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattctgactgtggaaatactggccttaggaatcctggtgtatatatagaaccagtatg 260
Query: 61 tcttttccacagagctcatcagcgaggtttgcatagcaacaggtactcagtgtggttcag 120
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tcttttccacagggctcatcagcgaggtttgcataacaacaggtactcagtgtggttcag 320
Query: 121 cacatgctcattgagtgcccactgtgttccagatatgaggatgcaaaaggagctgtggaa 180
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 321 cacatgctcattgagtgcccactgtgttccagatatgaggctgtaaaaggagctgtggaa 380
Query: 181 gaactctgctctcgaaaggctgatgtgtgttagaatagttgggaagacacaggtttctt- 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactctgctctcgaaaggc---tgtgtgttagaatagttgggaagacacaggtttcttc 437
Query: 240 ccctttctgaaacttactcatgcatttcaaaagaacagggattgtatttttgccttcttt 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 438 ccctttctgaaacttactcatgcatctcaaaagaacagggattgtatttttgccttcttt 497
Query: 300 cccatattctcggaatggctaagagcaacgtggaggctgactattgttgacagattgacc 359
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 498 cccatattctctgaatggctaagagcaatgtggaggctgactattgttgacagattgacc 557
Query: 360 gaattctgaaaagcctgttgctaatttcaggtaaaggtttttgaagcccaggagaagatg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaattctgaaaagcctgttgctaatttcaggtaaaggtttttgaagcccaggagaagatg 617
Query: 420 agaagagtcattgtgtcagtaccaaatgtaacatttttattttttttttacatagtctct 479
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 618 agaagagtcattgtgtcagttccaaatgtaacatttttattttttttt-acatagtctct 676
Query: 480 gttgtcctttactgt 494
|||||||||||||||
Sbjct: 677 gttgtcctttactgt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 891
Length adjustment: 10
Effective length of query: 484
Effective length of database: 881
Effective search space: 426404
Effective search space used: 426404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
