MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-401E06
Chromosome	4 (Build37)
Map Location	120,771,464 - 120,772,024
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24
Downstream gene	Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927, LOC666931, LOC666937
Link	Open Mouse BAC browser

Click to get alignment info.

name	Hivep3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16656 MGI:106589
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Edn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13615 MGI:95284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxo6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329934 MGI:2676586
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scmh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:29871 MGI:1352762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slfnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:194219 MGI:3045330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:51797 MGI:1858304
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667063 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667063 MGI:3648581
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Cited4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56222 MGI:1861694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnq4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60613 MGI:1926803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfyc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18046 MGI:107901
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rims3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242662 MGI:2443331
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626489 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626489
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	3110037I16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73172 MGI:1920422
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp69 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381549 MGI:107794
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smap1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69780 MGI:1917030
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col9a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12840 MGI:88466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zmpste24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230709 MGI:1890508
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmco2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69469 MGI:1916719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042174 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042174
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Rlf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109263 MGI:1924705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000008911 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545677 MGI:3652130
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666914 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666914 MGI:3648197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC666921 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC666927 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC666931 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	LOC666937 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 79 ESTs, 23 Proteins pseudo : _no_value

name	Hivep3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107624 GeneID:16656 MGI:106589
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : human immunodeficiency virus type I enhancer binding protein 3 transcript_id : NM_010657.3

name	Edn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122937364 GeneID:13615 MGI:95284
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endothelin 2 transcript_id : NM_007902.2

name	Foxo6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34610226 GeneID:329934 MGI:2676586
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box O6 transcript_id : NM_194060.1

name	Scmh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22095026 GeneID:29871 MGI:1352762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sex comb on midleg homolog 1 transcript_id : NM_013883.1

name	Slfnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802787 GeneID:194219 MGI:3045330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schlafen like 1 transcript_id : NM_177570.3

name	Ctps (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7949028 GeneID:51797 MGI:1858304
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytidine 5'-triphosphate synthase transcript_id : NM_016748.1

name	EG667063 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252886 GeneID:667063 MGI:3648581
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG667063, transcript variant 2 transcript_id : XM_001001207.2

name	EG667063 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372253 GeneID:667063 MGI:3648581
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG667063, transcript variant 1 transcript_id : XM_001001194.1

name	Cited4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113866003 GeneID:56222 MGI:1861694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 transcript_id : NM_019563.2

name	Kcnq4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487266 GeneID:60613 MGI:1926803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, subfamily Q, member 4 transcript_id : NM_001081142.1

name	Nfyc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326542 GeneID:18046 MGI:107901
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear transcription factor-Y gamma transcript_id : NM_008692.3

name	Nfyc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326537 GeneID:18046 MGI:107901
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear transcription factor-Y gamma transcript_id : NM_001048168.1

name	Rims3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130708 GeneID:242662 MGI:2443331
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulating synaptic membrane exocytosis 3 transcript_id : NM_182929.2

name	3110037I16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312138 GeneID:73172 MGI:1920422
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110037I16 gene transcript_id : NM_028457.1

name	Zfp69 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131096 GeneID:381549 MGI:107794
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 69 transcript_id : NM_001005788.2

name	Smap1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981559 GeneID:69780 MGI:1917030
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stromal membrane-associated protein 1-like transcript_id : NM_133716.2

name	Col9a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680977 GeneID:12840 MGI:88466
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IX, alpha 2 transcript_id : NM_007741.1

name	Zmpste24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129981 GeneID:230709 MGI:1890508
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc metallopeptidase, STE24 homolog (S. cerevisiae) transcript_id : NM_172700.2

name	Tmco2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486794 GeneID:69469 MGI:1916719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane and coiled-coil domains 2 transcript_id : NM_001081312.1

name	Rlf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486603 GeneID:109263 MGI:1924705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rearranged L-myc fusion sequence transcript_id : NM_001081013.1

name	OTTMUSG00000008911 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386171 GeneID:545677 MGI:3652130
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000008911 transcript_id : NM_001033791.2

name	EG666914 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252887 GeneID:666914 MGI:3648197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : predicted gene, EG666914 transcript_id : XM_986980.2

name	LOC666921 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372249 GeneID:666921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : hypothetical LOC666921 transcript_id : XM_987018.1

name	LOC666927 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252889 GeneID:666927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : hypothetical LOC666927 transcript_id : XM_987049.2

name	LOC666931 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253078 GeneID:666931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : hypothetical LOC666931 transcript_id : XM_987080.2

name	Hivep3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124107625 GeneID:16656 MGI:106589
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045941 - positive regulation of transcription [Evidence ISS] codon_start : 1 note : kappa B and Rss recognition component product : human immunodeficiency virus type I enhancer binding protein 3 protein_id : NP_034787.2

name	Edn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:122937365 GeneID:13615 MGI:95284
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_process : GO:0009405 - pathogenesis [Evidence IEA]; GO:0045987 - positive regulation of smooth muscle contraction [Evidence IDA]; GO:0050880 - regulation of blood vessel size [Evidence IEA]; GO:0019229 - regulation of vasoconstriction [Evidence IEA]; GO:0042310 - vasoconstriction [Evidence IEA] codon_start : 1 note : vasoactive intestinal contractor peptide product : endothelin 2 protein_id : NP_031928.2

name	Foxo6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610227 CCDS:CCDS18588.1 GeneID:329934 MGI:2676586
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 function : transcription factor note : forkhead box protein O6 product : forkhead box O6 protein_id : NP_918949.1

name	Scmh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22095027 CCDS:CCDS18589.1 GeneID:29871 MGI:1352762
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IC] GO_process : GO:0007275 - development [Evidence IEA]; GO:0016458 - gene silencing [Evidence ISS]; GO:0016481 - negative regulation of transcription [Evidence NAS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : sex comb on midleg-like 1; sex comb on midleg-like 3 product : sex comb on midleg homolog 1 protein_id : NP_038911.1

name	Slfnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243912 CCDS:CCDS18590.1 GeneID:194219 MGI:3045330
definition	codon_start : 1 note : novel protein containing a Divergent AAA domain product : schlafen like 1 protein_id : NP_808238.1

name	Ctps (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949029 CCDS:CCDS18591.1 GeneID:51797 MGI:1858304
definition	EC_number : 6.3.4.2 GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0003883 - CTP synthase activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA] GO_process : GO:0006541 - glutamine metabolism [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : CTP synthase product : cytidine 5'-triphosphate synthase protein_id : NP_058028.1

name	EG667063 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94372256 GeneID:667063 MGI:3648581
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001001207.1

name	EG667063 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94372254 GeneID:667063 MGI:3648581
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001001194.1

name	Cited4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9625010 CCDS:CCDS18592.1 GeneID:56222 MGI:1861694
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003713 - transcription coactivator activity [Evidence IDA] [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : msg1-related protein 2 product : Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein_id : NP_062509.1

name	Kcnq4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487267 GeneID:60613 MGI:1926803
definition	GO_component : GO:0016021 - integral to membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IMP] [Evidence IEA] GO_process : GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA] [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : potassium voltage-gated channel, subfamily Q, member 4 protein_id : NP_001074611.1

name	Nfyc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326538 GeneID:18046 MGI:107901
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] [Evidence ISS]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : nuclear transcription factor Y subunit gamma-like product : nuclear transcription factor-Y gamma protein_id : NP_001041633.1

name	Nfyc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560663 CCDS:CCDS18594.1 GeneID:18046 MGI:107901
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] [Evidence ISS]; GO:0005667 - transcription factor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : nuclear transcription factor Y subunit gamma-like product : nuclear transcription factor-Y gamma protein_id : NP_032718.2

name	Rims3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859823 CCDS:CCDS18595.1 GeneID:242662 MGI:2443331
definition	GO_component : GO:0045202 - synapse [Evidence IEA] GO_process : GO:0006887 - exocytosis [Evidence IEA]; GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : regulating synaptic membrane exocytosis 3 protein_id : NP_891559.1

name	3110037I16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312139 CCDS:CCDS18596.1 GeneID:73172 MGI:1920422
definition	codon_start : 1 product : hypothetical protein LOC73172 protein_id : NP_082733.1

name	Zfp69 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54261738 CCDS:CCDS18597.1 GeneID:381549 MGI:107794
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : Zfp63p product : zinc finger protein 69 protein_id : NP_001005788.1

name	Smap1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981560 CCDS:CCDS18598.1 GeneID:69780 MGI:1917030
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0043087 - regulation of GTPase activity [Evidence IEA] codon_start : 1 note : novel protein containing a putative GTPase activating protein for Arf domain product : stromal membrane-associated protein 1-like protein_id : NP_598477.2

name	Col9a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680978 CCDS:CCDS18599.1 GeneID:12840 MGI:88466
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : procollagen, type IX, alpha 2 protein_id : NP_031767.1

name	Zmpste24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370012 CCDS:CCDS18600.1 GeneID:230709 MGI:1890508
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IDA] [Evidence IMP]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006998 - nuclear membrane organization and biogenesis [Evidence IMP] [Evidence IGI]; GO:0030327 - prenylated protein catabolism [Evidence IDA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : farnesylated-proteins converting enzyme 1 product : zinc metalloproteinase, STE24 homolog protein_id : NP_766288.1

name	Tmco2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486795 GeneID:69469 MGI:1916719
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : transmembrane and coiled-coil domains 2 protein_id : NP_001074781.1

name	Rlf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486604 GeneID:109263 MGI:1924705
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004182 - carboxypeptidase A activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : rearranged L-myc fusion sequence protein_id : NP_001074482.1

name	OTTMUSG00000008911 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702113 GeneID:545677 MGI:3652130
definition	codon_start : 1 product : hypothetical protein LOC545677 protein_id : NP_001028963.1

name	EG666914 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252888 GeneID:666914 MGI:3648197
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992074.2

name	LOC666921 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372250 GeneID:666921
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992112.1

name	LOC666927 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252890 GeneID:666927
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992143.2

name	LOC666931 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253079 GeneID:666931
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992174.2

name	LOC626489 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626489
definition	number : 1 pseudo : _no_value

name	LOC100042174 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042174
definition	number : 2 pseudo : _no_value

name	LOC100042174 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042174
definition	number : 1 pseudo : _no_value

name	LOC666937 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253080 GeneID:666937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 79 ESTs, 23 Proteins product : similar to creatine kinase pseudo : _no_value transcript_id : XR_030521.1

clone name	MSMg01-500O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506B06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-541G10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-432A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-358N19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-413G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010B02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-401E06.T7 (MSMg01no401_e06.b1)	MSMg01-401E06.TJ (MSMg01no401_e06.g1)
ACC	AG500692	AG500693
length	743	755
length of high quality (start - end)	560 (77 - 636)	528 (80 - 607)
definition	CHROMAT_FILE: MSMg01no401_e06.b1 PHD_FILE: MSMg01no401_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:51 2005	CHROMAT_FILE: MSMg01no401_e06.g1 PHD_FILE: MSMg01no401_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:51 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGACGATC CGCGGAATTCAACAATTTCCTAAAATCACTATGGCCCCTGTTACTACTTT GACTTTACTTGAAACGTGAAGCCAGAATTTTTCTGACCACAAAGTAAATG TTATTTAATTAATAGTTTCTATGAACTAATAGCACTTTGTATAAACATTA TTTATAGTGAATTGCGAAATCTTTAGCTCCAACTAAAATATGTAGCTCCA ATTTAAAATATGGTGAGATTGTGATGCTAAAGATGTTGAGATTAAGGTTT CAAATTTCTCAACCATGACTAATTTATCTGCATGAGCGTAATCAGTAGAA GTTACTTGACAAAGTGAATTACTTCAATATAGGATCACAGATTCTTTGGC AACCAAAAGTTCTTTTGGGGGATTTTTTGCTTTCAGCAAAATTACTGATT GAACTGTTAGCTGAACTTTGAGTTTTGTTCACGGGCCTGGGAAATATTTT GTACTTGATTGGGTGTAAGGCAAATGGCATGAAAACAGGGATCACAGGCA AGTAGAGACATAGCTCTAACAAGTGCCATTTCCTCAGGTAGAAGGTCTTC AGAGAGGAGGCTTCGTCCCTGTCCTCCTTTTCCATGGCTGGTTGGATGTT TTGTACTGTCACCCATCATGGTGTTGTAGAGTCCTGTGGAAAACACAAGC ATAGCCTAGCCCTTGTGTCCACAAGGGTGGATGCCCTGTGATG	NNTTCGATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATGCCACTCTCAGCAATA GACAGATCATGGAAACAGAAACTAAACAGAGATACATGGACACTAACAGG AGTTATGAAACAAATGGATTTGACAGATATCTATAGGATGTTTCAACCTA AAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAA ATTGACTATATAATCCATCACAAAACAGGCCTCAACAGATACAAGAAGAA TGAAATAATCACATGCATCTGATCATATCACCACTGACTAAGGCTGGTCT TCAATAACAACATAAACAATAGAAAGACCACGTACACATGGTGAAAGACC CCCGAAGGGAGACCCTCACTCAAGCCTCGGGACAGCCGTGGACCCAAGAA GACACCGAGACCGAACTCAAAATGTTGAAGGCAAGATTTAATAAAGCAAC AGAAAGAAAGCACATAGACCAGAGCTCTGGGGTCGAAACTCATGCACCTA GTATGGTGTAGAGGAGAATCGACGACGAGCCAAATTTTTCACAGGCTTAT ATAGGAAAAACTCAAGGGGGGAGAGCGGGGCAGGGAAAGTACAAGTTTGC ATAACTAAGGGGTTCTGCCAAGGGACAGGGGTTCCTGCCAGGGGTTCTAC GCAACTAAAGGGCCCTGCCTTATTATTTGGCAAAGGACCCGGTTCATTCT GAGGG
quality values	Open. Hide. 0 0 0 3 6 6 8 8 8 8 8 13 14 23 31 33 33 33 33 33 36 36 30 30 17 17 17 28 28 41 26 19 15 14 13 7 7 7 11 11 8 8 11 11 11 8 8 10 12 15 19 28 36 41 30 30 29 28 31 31 31 21 17 11 11 9 15 15 16 9 7 7 8 8 8 10 14 24 27 37 41 47 47 53 53 57 59 57 57 57 57 57 53 53 53 53 53 53 57 57 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 48 43 41 39 41 41 47 47 57 57 57 57 68 68 68 68 68 50 50 57 57 57 57 57 57 68 68 68 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 57 68 68 68 68 68 68 68 68 68 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 54 54 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 59 35 35 33 35 42 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 48 57 57 59 59 59 57 57 57 48 48 48 50 50 50 50 34 34 14 12 12 8 9 8 11 11 17 18 29 25 46 43 48 50 59 50 59 59 59 59 57 57 57 57 57 57 59 57 57 57 57 57 57 68 68 68 57 57 57 48 48 48 59 59 59 59 48 54 54 59 59 57 57 48 48 57 57 59 59 68 68 68 68 57 68 68 68 68 68 59 59 59 59 59 59 57 68 68 57 57 57 54 48 48 57 57 59 59 59 68 68 68 68 59 68 68 59 59 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 54 54 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 54 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 46 47 43 41 43 47 47 48 50 50 53 50 68 68 68 68 68 68 57 57 54 57 57 57 57 68 59 59 59 59 59 57 57 57 57 57 57 59 48 48 57 57 57 57 57 48 48 59 59 59 59 41 41 41 41 37 27 27 27 32 33 37 41 40 39 39 39 43 43 34 41 59 59 32 32 29 39 39 39 59 43 40 37 40 43 39 43 47 50 50 47 59 43 43 43 48 48 59 46 39 34 24 19 12 16 23 37 30 30 30 33 28 24 32 20 20 18 18 12 12 15 21 24 34 34 28 24 24 34 34 37 31 30 30 28 31 31 39 37 35 31 36 39 37 37 41 39 39 37 31 31 32 15 13 9 9 9 16 18 24 21 18 18 13 13 9 9 9 21 23 28 28 28 23 23 9 9 9 15 12 22 18 25 25 28 28 21 18 11 11 9 9 9 9 9 9 10 11 12 12 12 17 19 15 15 13 20 21 21 16 13 9 12 12 16 13 23 11 11 10 10 11 12 14 16 9 9 12 11 11 16 19 11 11 11 12 9 8 8 8 8 14 12 12 11 11 11 12 8 8 8 8 8 11 14 10 6 8 6 6 6	Open. Hide. 0 0 3 6 6 6 8 8 8 8 8 3 0 3 9 15 25 33 44 44 39 39 39 44 44 44 44 37 35 35 37 23 21 10 12 10 9 10 8 8 8 8 10 16 18 30 27 30 30 37 44 44 36 36 36 33 33 33 59 59 33 21 9 12 8 8 8 8 9 19 22 32 28 22 22 32 32 36 36 38 50 50 53 53 53 53 53 53 57 53 47 47 47 42 42 47 53 68 68 68 68 68 68 68 51 51 50 50 50 50 51 68 57 50 50 50 50 50 50 54 54 54 57 57 57 57 57 57 57 50 51 50 50 50 47 54 48 50 51 50 50 50 57 57 57 57 68 50 50 50 51 51 50 51 51 51 51 51 68 68 68 68 51 50 50 50 50 50 57 57 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 59 59 68 68 68 68 57 68 68 68 68 68 68 59 68 68 68 59 59 59 68 59 59 59 62 68 68 68 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 62 62 44 38 18 10 10 10 12 12 19 19 35 43 44 62 57 68 68 68 68 68 68 68 68 68 68 59 59 52 52 57 57 57 57 57 57 68 68 59 57 57 57 57 57 57 57 52 57 57 57 57 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 52 52 52 59 59 68 68 68 68 68 57 57 57 54 54 57 57 57 57 57 57 57 68 68 57 57 57 57 50 57 57 57 57 59 59 57 54 59 57 48 48 57 44 42 57 57 48 57 57 57 48 48 48 59 57 57 47 57 57 47 48 57 59 59 57 57 54 46 46 43 46 46 48 48 48 48 48 54 59 59 59 46 43 43 43 46 57 57 48 48 48 57 59 59 57 48 48 48 48 48 48 57 57 57 59 59 59 59 59 59 48 48 48 48 46 46 46 59 59 59 44 41 37 44 41 41 41 41 37 37 37 43 37 39 39 36 39 59 34 34 35 37 34 34 32 39 39 37 37 37 31 37 39 43 41 41 41 37 37 37 35 31 31 39 37 37 37 43 43 36 28 32 31 32 30 33 33 34 34 35 28 28 31 31 28 33 37 39 47 39 36 36 36 34 26 20 16 16 23 19 22 30 34 34 25 25 30 34 34 23 23 23 34 31 36 28 28 28 26 28 8 8 6 6 6 11 13 14 14 10 16 17 20 22 24 28 24 24 24 24 18 14 18 19 19 17 20 18 24 25 30 27 25 17 10 10 10 10 10 10 11 17 21 16 11 10 11 12 20 24 27 25 18 14 14 15 14 14 12 15 19 20 18 16 12 12 16 11 8 8 9 9 11 8 10 8 8 6 6 6 10 10 7 9 8 8 8 11 14 19 16 11 13 13 10 10 9 9 9 10 10 9 9 10 10 10 12 9 9 9 9 9 10 12 15 13 10 10 10 10 8 10 10 9 8 8 9 9 8 8 9 11 11 9 8 8 8 8 8 8 8 6 6 6 6 6 6 12 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no401_e06.b1 MSMg01no401_e06.b1 CHROMAT_FILE:
MSMg01no401_e06.b1 PHD_FILE: MSMg01no401_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:51 2005
         (560 letters)



>mm_chr4_120771265_120772224
          Length = 960

 Score = 1062 bits (549), Expect = 0.0
 Identities = 558/561 (99%), Gaps = 1/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactatggcccctgttactactttgactttacttgaaacgtgaagccagaatttttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cactatggcccctgttactactttgactttacttgaaacgtgaagccagaatttttctga 259

                                                                       
Query: 61  ccacaaagtaaatgttatttaattaatagtttctatgaactaatagcactttgtataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccacaaagtaaatgttatttaattaatagtttctatgaactaatagcactttgtataaac 319

                                                                       
Query: 121 attatttatagtgaattgcgaaatctttagctccaactaaaatatgtagctccaatttaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 attatttatagtgaattgcgaaatctttagctccaattaaaatatgtagctccaatttaa 379

                                                                       
Query: 181 aatatggtgagattgtgatgctaaagatgttgagattaaggtttcaaatttctcaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatatggtgagattgtgatgctaaagatgttgagattaaggtttcaaatttctcaaccat 439

                                                                       
Query: 241 gactaa-tttatctgcatgagcgtaatcagtagaagttacttgacaaagtgaattacttc 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gactaaatttatctgcatgagcgtaatcagtagaagttacttgacaaagtgaattacttc 499

                                                                       
Query: 300 aatataggatcacagattctttggcaaccaaaagttcttttgggggattttttgctttca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatataggatcacagattctttggcaaccaaaagttcttttgggggattttttgctttca 559

                                                                       
Query: 360 gcaaaattactgattgaactgttagctgaactttgagttttgttcacgggcctgggaaat 419
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 gcaaaattactgattgaactgttagctgaactttgagttttgttcatgggcctgggaaat 619

                                                                       
Query: 420 attttgtacttgattgggtgtaaggcaaatggcatgaaaacagggatcacaggcaagtag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attttgtacttgattgggtgtaaggcaaatggcatgaaaacagggatcacaggcaagtag 679

                                                                       
Query: 480 agacatagctctaacaagtgccatttcctcaggtagaaggtcttcagagaggaggcttcg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agacatagctctaacaagtgccatttcctcaggtagaaggtcttcagagaggaggcttcg 739

                                
Query: 540 tccctgtcctccttttccatg 560
           |||||||||||||||||||||
Sbjct: 740 tccctgtcctccttttccatg 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information