TTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATGCGC
GGAATTCATTGTTTTGTCATAATAACAGTATCAGCGTCTATATTTGGAAT
ATATATTTTGGCAGGTTCTTACACTGTCTTGCCAAGAAGTTGTCTGTCCA
CACTACCATGGAGGGAGGGTATCAAATCCTCATTGTGGATTATAGAAGTT
AGTACTACAATCAAGAATTTAAAAGGTTCAGGTATAGTGGTTCCTACCAC
ATTTTCCATTTATTCTTACTATTTGGTTAATGCAGAAGCCAAATGGATTA
TGGAGAACAAGGATTAATCTTTAATCCTTCTACAGTTGCAACTTATGACC
CAGTTGTGTGTTCCTTACTCCAGTAGATTACCACATCTCTTGGAACTTAT
TATACAGCTATTGACCATTAAAATGCTATTTTTAAAGCACCTGTTTATAA
GGACTTGCTTATAAGTAAGCAGTACCATTTTAGCTGGTAAGTCCAGTAAT
ACAGCTTTATAGTTCTACCTTAGGGGTCTTTTAGTTCTTCAGCATTGCGC
TATATTTCTATTTCATATGAGTCTTGATTCCCTCCCTTTCCCACAGGAAT
CAAACTATCTTCTCTATATTGCTGATATTATACTAATTGGATTAAGACTA
GTAAGCGTTTTTTTTTTTTGTCCTTGTTTAAATTTATTTCTAGTTCATCA
CTTGTTATTTTCCCTTCCATTTTTTTTCTTTCCTTAGTTCCCCTCCACTT
TTTCC

NNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTACAAAGCAAACTTCAC
AAGCATTTTCCTGGATAAATTCAGGTCTTCTTATGCCACCACAGGGTGGC
AGTATCTACTGATGAGATAACATTAAAGTAACAACCACTTGAATGCTTAA
GTGAGCATTGCTAAGGAAATCATCATCTCGATACTCAGAGGAGATCTCAA
GTCCATAAGCTAGTAGTTTTGTCTCATACGTAATATAATTTTACTCTGGA
GTGGAGCATAGCTTCCCATTGATACCAAACTACAACATTCATTCCATATG
AAGCAGTTGAACTTCTAGTACTGAACTTCTAGATAACGGGATTATTGTAC
ATGTTAGGCAGATGTACATGCTCTAAAGGCTTATTTTTCCCCCAGTAAAA
TATAAAATCATACTTTCAGCAAGGCTTAGAGGAAATAAAGACATAGAATT
AGAGAATTAAGAATTCTGAGTTTAACAAACATCCTGGAAAATATTGACAA
TGTTATTGGGCAGATTGATAATGTATTTCTCACACAGAATTTCTACTTAT
GCTTAAAGAGTGATGTCAAAAAAGAAACTACTGGAATTTTAAGTAAGCTC
CTTAAAATCATGATAACTTGTGACAGGCAAGGTTTGTCAGCAGATAAAGG
CATTTGCTGACCAGTTTGACGACTTAATTCAGTCCCAAGATCCCATGAA

Query= MSMg01no401_g01.b1 MSMg01no401_g01.b1 CHROMAT_FILE:
MSMg01no401_g01.b1 PHD_FILE: MSMg01no401_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:59 2005
         (238 letters)



>mm_chr4_72560333_72560970
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgtctatatttggaatatatattttggcaggttcttacactgtcttgccaagaagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcgtctatatttggaatatatattttggcaggttcttacactgtcttgccaagaagttg 260

                                                                       
Query: 61  tctgtccacactaccatggagggagggtatcaaatcctcattgtggattatagaagttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtccacactaccatggagggagggtatcaaatcctcattgtggattatagaagttag 320

                                                                       
Query: 121 tactacaatcaagaatttaaaaggttcaggtatagtggttcctaccacattttccattta 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tactacaatcaagaatttaaaaggttcagggatagtggttcctaccacattttccattta 380

                                                                     
Query: 181 ttcttactatttggttaatgcagaagccaaatggattatggagaacaaggattaatct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttactatttggttaatgcagaagccaaatggattatggagaacaaggattaatct 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no401_g01.g1 MSMg01no401_g01.g1 CHROMAT_FILE:
MSMg01no401_g01.g1 PHD_FILE: MSMg01no401_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:59 2005
         (584 letters)



>mm_chr4_72703212_72704195
          Length = 984

 Score = 1052 bits (544), Expect = 0.0
 Identities = 574/584 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttacaaagcaaacttcacaagcattttcctggataaattcaggtcttcttatgcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 784 tttcttacaaagcaaacttcacaagcattttcctggataaattcaggtcttcatatgtca 725

                                                                       
Query: 61  ccacagggtggcagtatctactgatgagataacattaaagtaacaaccacttgaatgctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 724 ccacagggtggcagtatctactgatgagataacattaaagtaacaaccacatgaatgctt 665

                                                                       
Query: 121 aagtgagcattgctaaggaaatcatcatctcgatactcagaggagatctcaagtccataa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 664 aagtgagcattgctaaggaaatcatcatctcgatattcagaggagatctcaagtccataa 605

                                                                       
Query: 181 gctagtagttttgtctcatacgtaatataattttactctggagtggagcatagcttccca 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gctagtagttttgtctcatatgtaatataattttactctggagtggagcatagcttccca 545

                                                                       
Query: 241 ttgataccaaactacaacattcattccatatgaagcagttgaacttctagtactgaactt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 544 ttgataccaaactacaacattcattccatatgaggcagttgaacttctagtactgaactt 485

                                                                       
Query: 301 ctagataacgggattattgtacatgttaggcagatgtacatgctctaaaggcttattttt 360
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 484 ctagataacaggattattgtacatgttaggcagatgtacatgctgtaaaggcttattttt 425

                                                                       
Query: 361 cccccagtaaaatataaaatcatactttcagcaaggcttagaggaaataaagacatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cccccagtaaaatataaaatcatactttcagcaaggcttagaggaaataaagacatagaa 365

                                                                       
Query: 421 ttagagaattaagaattctgagtttaacaaacatcctggaaaatattgacaatgttattg 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttagagaattaagaattctgcgtttaacaaacatcctggaaaatattgacaatgttattg 305

                                                                       
Query: 481 ggcagattgataatgtatttctcacacagaatttctacttatgcttaaagagtgatgtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggcagattgataatgtatttctcacacagaatttctacttatgcttaaagagtgatgtca 245

                                                       
Query: 541 aaaaagaaactactggaattttaagtaagctccttaaaatcatg 584
           ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 aaaaagaaactactggaattttaagtaagctccttaaaaacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)