Query= MSMg01no401_h04.b1 MSMg01no401_h04.b1 CHROMAT_FILE:
MSMg01no401_h04.b1 PHD_FILE: MSMg01no401_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:04 2005
(609 letters)
>mm_chr4_35992418_35993436
Length = 1019
Score = 1023 bits (529), Expect = 0.0
Identities = 589/615 (95%), Gaps = 12/615 (1%)
Strand = Plus / Minus
Query: 6 gaattcatactgtttctcacatgattgaaaaagtgaaaatttgtaaattaaaaaatctga 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattcatactgcttctcacatgattgaaaaagtgaaaatttgtaaattaaaaaatctga 760
Query: 66 agtcgggaatgaatgacttacaaattcctagcagcttcctatcctaatcttaaatctctc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 759 agtcgggaatgaatgacttacaaattcctagcagcttcctatcctaatcttaaatctgtc 700
Query: 126 taggatataaatattaacatttagatatgcaaatgggtt-----attgcatgggtaaatg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 699 taggatataaatattaacatttagatatgcaaatgggttgttgcattgcatgggtaaatg 640
Query: 181 gaccatctttattgtaatgtagtgtgcaagctaactgaatacttttatttcaataataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaccatctttattgtaatgtagtgtgcaagctaactgaatacttttatttcaataataat 580
Query: 241 gtctatttcaaggtgtgaagttatagtaaagtagttttatttctttggaagaaatatgta 300
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 579 gtttatttcaaggtgtgaagttatagtaaagtagtaacatttctttggaagaaatatgta 520
Query: 301 gtgtttttttttttctccatttgacttttcaccaaacagaattcttaatcatgact---- 356
||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 519 gtg-ttttttttttctccatttgacttttcaccaaatagaattgttaatcatgacttgga 461
Query: 357 --tggagaattttcaccattactgtccagaagaaagcaataaaatacagattgatttcat 414
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 460 gatggagaattttcaccattactgtccagaagaaagcaataaaatatagattgatttcat 401
Query: 415 ttgtcccacgttctgatcaccattcccaaatgagtgatagttatctcacttctgtgagtt 474
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgtcccacgttctcatcaccattcccaaatgagtgatagttatctcacttctgtgagtt 341
Query: 475 atgacctatagcttatccttgtcaatatgtgtaacaaatgcctgtttcaaattgtggctt 534
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 340 atcacctatagcttatccttgtcaatatgtgtaacaaatgcctctttcaaattgtggctt 281
Query: 535 ttaattaatctaaatagttgtattgaatatcattctatatatactagtataatcatatat 594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 280 ttaattaatctaaatagttgtattgaatatcattctatatatactagtaaaatcatacat 221
Query: 595 tctatactgccgagt 609
|||||||||||||||
Sbjct: 220 tctatactgccgagt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1019
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1009
Effective search space: 604391
Effective search space used: 604391
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_h04.g1 MSMg01no401_h04.g1 CHROMAT_FILE:
MSMg01no401_h04.g1 PHD_FILE: MSMg01no401_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:04 2005
(314 letters)
>mm_chr4_35834617_35835330
Length = 714
Score = 528 bits (273), Expect = e-154
Identities = 305/321 (95%), Gaps = 11/321 (3%)
Strand = Plus / Plus
Query: 1 ctaatgaaatgtctacatttacaaatacagagattagaagaaggaaaaaaatattacata 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatgaaatgtctacatctacaaatacagagattagaagaaggaaaaaaatattacata 260
Query: 61 tgtttgtgcctcagaggattccatgtaagttcagaacctcactgaaacagacacctaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttgtgcctcagaggattccatgtaagttcagaacctcactgaaacagacacctaata 320
Query: 121 ggtggaacaa---tatgaactaaccagtacccccccagagctcgtgtctctagctgcata 177
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ggtggaacaacaatatgaactaaccagtacccccccagagctcgtgtctctatttgcata 380
Query: 178 tgtagcagaagatggcctagtccgccatcactgggaagagaggccccttggtcttgcaaa 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatcagaagatggcctagtccgccatcactgggaagagaggccccttggtcttgcaaa 440
Query: 238 cattatgtttt----agtacaggggaatgccagggccatgaagtgggagtgggtgggtag 293
||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cattatg----ccccagtacaggggaatgacagggccatgaagtgggagtgggtgggtag 496
Query: 294 gggagcagggtgagggggagg 314
|||||||||||||||||||||
Sbjct: 497 gggagcagggtgagggggagg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
