Query= MSMg01no401_n24.b1 MSMg01no401_n24.b1 CHROMAT_FILE:
MSMg01no401_n24.b1 PHD_FILE: MSMg01no401_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:36 2005
(249 letters)
>mm_chr4_13008225_13008873
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 taatctagttgaatttatgtgctgtaataaatagtaagccatatctataataattgtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatctagttgaatttatgtgctgtaataaatagtaagccatatctataataattgtgac 260
Query: 61 tgtccaagtccttaaaacattgtgtttgtgtgtgtgtttttgtacatttgcaggttctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccaagtccttaaaacattgtgtttgtgtgtgtgtttttgtacatttgcaggttctgc 320
Query: 121 ccatgtgggagccaaacagcaactctaggtgttgttttgaggtaataacttttaaaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgtgggagccaaacagcaactctaggtgttgttttgaggtaataacttttaaaaacc 380
Query: 181 ttttgatatttttaaatacaaggtctactattagcttgaacattgtaaagtaggttaggt 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ttttgatatttttaaatacaaggtctactattagcttgaacgttgtaaagtaggttaggt 440
Query: 241 tgcctgctt 249
|||||||||
Sbjct: 441 tgcctgctt 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no401_n24.g1 MSMg01no401_n24.g1 CHROMAT_FILE:
MSMg01no401_n24.g1 PHD_FILE: MSMg01no401_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:36 2005
(549 letters)
>mm_chr4_13167883_13168825
Length = 943
Score = 996 bits (515), Expect = 0.0
Identities = 539/549 (98%), Gaps = 6/549 (1%)
Strand = Plus / Minus
Query: 1 tcttctgaattttatgtgattttttttttgcctttttttttcaaagaaaggtcctctctc 60
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 743 tcttctgaattttatgtgatttttttt---cc--tttttttcaaagaaaggtcctctctc 689
Query: 61 tcttctgcacacagcagcagtatcttgccacagtgacaaaatggctgaaaataaccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 688 tcttctgcacacagcagcagtatcttgccacagtgacaaaatggctgaaaataaccatct 629
Query: 121 gttccaggatctctctcaaaacacacaccataatcccaaagaattctcgccatttagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gttccaggatctctctcaaaacacacaccataatcccaaagaattctcgccatttagcac 569
Query: 181 tgtcaggttgaaaagtcggcagaggaaatgaaactaaacttgcttttcacaacacgcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgtcaggttgaaaagtcggcagaggaaatgaaactaaacttgcttttcacaacacgcagc 509
Query: 241 aaaccatttctctctatgaatttggagaaaacatatatgctcttctcagaccagctccaa 300
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaaccatttc-cacaatgaatttggagaaaacatatatgctcttctcagaccagctccaa 450
Query: 301 aataatctgggaagaaaatgaagtcagttgtcttaatacatttttttaagaaggcaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aataatctgggaagaaaatgaagtcagttgtcttaatacatttttttaagaaggcaattt 390
Query: 361 ggttgaagttcaaagaggactctaagattattttcttgaaaacagtcaaaataggtcaac 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 389 ggttgaagttcaaagaggactctaagattattttcctgaaaacagtcaaaataggtcaac 330
Query: 421 ccgtgagaatcaaagcggacattcattccattcttcctaagtctccaaacaaagcaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccgtgagaatcaaagcggacattcattccattcttcctaagtctccaaacaaagcaggaa 270
Query: 481 atgcttgtctaaaagtcctcagaaaaacacagctccccagacatggtcattccttatttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atgcttgtctaaaagtcctcagaaaaacacagctccccagacatggtcattccttatttg 210
Query: 541 gtgcagtgg 549
|||||||||
Sbjct: 209 gtgcagtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 943
Length adjustment: 10
Effective length of query: 539
Effective length of database: 933
Effective search space: 502887
Effective search space used: 502887
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
