BAC Information

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BAC

Clone NameMSMg01-402G18
Chromosome4 (Build37)
Map Location 44,893,335 - 44,893,661
singlet/doubletsinglet
Overlap geneZcchc7
Upstream geneReck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneD4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402G18.T7 (MSMg01no402_g18.b1)MSMg01-402G18.TJ (MSMg01no402_g18.g1)
ACCAG501573AG501574
length737767
length of high quality
(start - end)
421 (50 - 470)327 (85 - 411)
definitionCHROMAT_FILE: MSMg01no402_g18.b1 PHD_FILE: MSMg01no402_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:18 2005CHROMAT_FILE: MSMg01no402_g18.g1 PHD_FILE: MSMg01no402_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTTCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGTTTCTCCATATAATGGCCATTTTGCTGCCCCCTGTCTT
CTTTTTAGAAGTCTTTAGTTCCATTAGCCAGTTTTTTGTTTTTTGTTTTT
TAAATTGTGTAGTGTGTTTTCTTGGTGTTTAGTTTTTCTGAGTTCTTCGT
GTATTCTGGTGAGGCACCAATCCTCTGTCAGATGTATTTGGCAGAGATTT
TCCCCCACCCCCGATAGTCTGTAGGCTGCCTCTTCAGTTTCTTCTGCAGT
TCAGAAGCCTGTTAGTTTCTTGATATCCCACTTGTTGATCGTTGGTCACT
GGGGCCCCATTGAGAAAACCTTTACGTAAGTATATCCTGAAGCATATTCC
CTACCCTCTTTGTGAATTTTCAGAGTTTCAGGTTAACATTGAGATTTTGA
CCCATTTGGAATTTTGCAAAAGGTGACAGATTATGGAACAATTTTTTCCA
CAAGACTTTACATCTCATAAGAGGGAACAGAAAGATTGTACGGGTCAGAG
TTTATAGAGGACTAAGGTGAAATATTATCTTCTGGATAGGATAGGGCTGA
TGATCAGTACAGGATCCAACCGTGTCAGTGTTCTATTTTGTTTACATGTT
TTTTTTTTTTCCCTCCTTTTTTTGAAAATCATTGTGCTTTTTATTTCTTT
CTGCATGTAATTGATTTCTTTTTATTATCACCCCTCC
CTCCTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCGACTGTGTGGTA
GACCAGCCATGCCATGAATTTAACTGTTCCTGTGGTCCCCATACTTGTAC
CCACCAAAAAGAGGAGAGAGAGAGAGAGAAAGCGACTTTGTTCTGAGCTT
TGAAAACCATGAGCCATTGAGTTTTGTGAATTCAAGTTAGACAGCAACAG
AGCCCAAAGCTCTAGGGGACAAAATCTGAAAGGGAATACACAAAACAGGT
AGAAGCTGTTTAACTGTTTATTGCTCTGTGTATGTGCATACTAGTGCTTT
GTGTGTACACACCAAAAACTACACTTTCATATGTTATGCAGATAGCCCTC
ATTACAGCTCAGCATGGGCTTTTGTTAAATATCCTCTTGACATATGACAA
GTAAGAGGGTTTTTTGTTTATACAGCTTTCCTGCTTCCCTTAAAAAGCTT
GGTTTTTAACCTATAAGGGGACCTTTTAAGAAATGGAAAGTAAACCCCCT
TTTGGAGCCTAAATTTTTTTTCTTTAAAGGTTTAATATTAATCTTACCCC
TGTAAAAAACTTTTTTATTTTCTCCAAATAATACCCCTCCGCGGATCTTT
TGCCTCTCTTCTCCCCTCGTTTCTAAGAGCGAAAATCGCGTTTTTTATTT
CATCTAAAATAAAAATGGGGTTTCCTCTTAACTTTCGTCGACATCTAAAT
CATCCCTCCTCTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_g18.g1 MSMg01no402_g18.g1 CHROMAT_FILE:
MSMg01no402_g18.g1 PHD_FILE: MSMg01no402_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:18 2005
         (327 letters)



>mm_chr4_44893135_44893861
          Length = 727

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccgactgtgtggtagaccagccatgccatgaatttaactgttcctgtggtccccatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccgactgtgtggtagaccagccatgccatgaatttaactgttcctgtggtccccatac 260

                                                                       
Query: 61  ttgtacccaccaaaaagaggagagagagagagagaaagcgactttgttctgagctttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtacccaccaaaaagaggagagagagagagagaaagcgactttgttctgagctttgaa 320

                                                                       
Query: 121 aaccatgagccattgagttttgtgaattcaagttagacagcaacagagcccaaagctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccatgagccattgagttttgtgaattcaagttagacagcaacagagcccaaagctcta 380

                                                                       
Query: 181 ggggacaaaatctgaaagggaatacacaaaacaggtagaagctgtttaactgtttattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggacaaaatctgaaagggaatacacaaaacaggtagaagctgtttaactgtttattgc 440

                                                                       
Query: 241 tctgtgtatgtgcatactagtgctttgtgtgtacacaccaaaaactacactttcatatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtgtatgtgcatactagtgctttgtgtgtacacaccaaaaactacactttcatatgt 500

                                      
Query: 301 tatgcagatagccctcattacagctca 327
           |||||||||||||||||||||||||||
Sbjct: 501 tatgcagatagccctcattacagctca 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)