BAC Information

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BAC

Clone NameMSMg01-402H17
Chromosome4 (Build37)
Map Location 150,211,650 - 150,212,068
singlet/doubletsinglet
Overlap genenone
Upstream geneSpsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1
Downstream geneLOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H17.T7 (MSMg01no402_h17.b1)MSMg01-402H17.TJ (MSMg01no402_h17.g1)
ACCAG501618AG501619
length739734
length of high quality
(start - end)
419 (76 - 494)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no402_h17.b1 PHD_FILE: MSMg01no402_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:23 2005CHROMAT_FILE: MSMg01no402_h17.g1 PHD_FILE: MSMg01no402_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCC
GCGGAATTCATTTTTTCTCCAGAATAAAGGGCATCTGTGTACCTATAAAA
TGTTTAAAGATCAACCTTTGCTAGTACTTGATTCTGATCGTGTCTAATCA
CGACGATCCAGATATAATTGAACAAGCCCTAGGCACAGAAGTTTATGACT
CAAACCTCAGTCCTTTCAGGAACCCAACCAGAAGTTTCTCCATGTGTCTG
TAGATGCTGCACCTCAGGATGTCTGTGAACACTTTACTGTGTCCCACTGT
GCCCTTGAGTTTGTTTCCTTTTCATGGAAAATGCCCATGAGAGGACGTTG
CGCAATCGCCAGCTGTTAGTCACTTCTGTTTCCTGTAGGCCCGCACTTAA
TTTCCCTGGTAGCTGGCACTGACTCTCAGGATTTAAGTTGCTGAGGGGTA
TTCGGGAAAACCCACAGAAATGCCTCAGATGAGGTTTGGCTGGCTCTGAG
TCTCGGTGACCTAACAGGCTTATAACTAGAGATTTCATCAAACAGAGCAG
GAAGGAAACCCCCAACAGTGCCTAACACCCACGGAATGTGCCGGAATCTA
AGGACCATCATTCGTTAAAAATGGAATCCCCACAGTGTCTTGAGCTTTGA
TGATATCTGCTGCGAATCCAGTTTGAACCTGTGTTTTGATGTGCCAATGA
TATTACTTCTTATTGGGGGGCGATTATTAAGGGTCTGAT
NTTCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCATTGTCTACACAGA
AGAGTTCCATGACAGCTAGAGATAGAGAGAGACAGAGAAAGAAAGACAGA
GAAGGGGGAACTCAGTGAGTTCAAGGCCAGCCTGGTCTGCATAGAGAGTT
CCAGGACAGCCAGGGCGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGACT
GATACAGAGACAGAGACAGAGAGACAGAGAGAGACAGAGACAGAGAGAGA
CAGAGAGAGACAGAGACTTTTTTTATACAGAGAGAGCAAGAGAGAGACAG
AGAAGGGGGAATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTT
CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCTAAAA
ATACAAAATTAAAAAAAAAAAAAGATTGGCAAAATGCCTGCCAGTTAGTG
AAAAGCTGTCTGTCTATACCCTGTGACACTACATACCTGCAAAATGGAAA
CAAAGTAAGAAAAACACAGAGAAGCTGGGGGCAGGGTGCTCTGATAGGCG
ATGTTAACAATCTGACTAGGAGAGACATAATGCAACAGAGGTAAAGCTCA
ATATGAAATTCTTCCCCAGCATCCTTAAACCGATATTGTTGGAGAAGTGG
GCGGGGCACATGCACTTGTCTTCTGATGTCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h17.b1 MSMg01no402_h17.b1 CHROMAT_FILE:
MSMg01no402_h17.b1 PHD_FILE: MSMg01no402_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:23 2005
         (419 letters)



>mm_chr4_150211450_150212268
          Length = 819

 Score =  743 bits (384), Expect = 0.0
 Identities = 411/424 (96%), Gaps = 10/424 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagggc-atctgtgtacctataaaatgtttaaagatcaacctttgctagtacttgattc 59
           ||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 619 aaagggcaat-tgtgtacctataaaatgtttaaagatcaacctttgatagcacttgattc 561

                                                                       
Query: 60  tgatcgtgtctaatcacgacgatccagatataattgaacaagccctaggcacagaagttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgatcgtgtctaatcacgacgatccagatataattgaacaagccctaggcacagaagttt 501

                                                                       
Query: 120 atgactcaaacctcagtcctttcaggaacccaaccagaagtttctccatgtgtctgtaga 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgactcaaacctcagtccttccaggaacccaaccagaagtttctccatgtgtctgtaga 441

                                                                       
Query: 180 tgctgcacctcaggatgtctgtgaacactttactgtgtcccactgtgcccttgagtttgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctgcacctcaggatgtctgtgaacactttactgtgtcccactgtgcccttgagtttgt 381

                                                                       
Query: 240 ttc----cttttcatggaaaatgcccatgagaggacgttgcgcaatcgccagctgttagt 295
           |||    |    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcccagc----catggaaaatgcccatgagaggacgttgcgcaatcgccagctgttagt 325

                                                                       
Query: 296 cacttctgtttcctgtaggcccgcacttaatttccctggtagctggcactgactctcagg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacttctgtttcctgtaggcccgcacttaatttccctggtagctggcactgactctcagg 265

                                                                       
Query: 356 atttaagttgctgaggggtattcgggaaaacccacagaaatgcctcagatgaggtttggc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttaagttgctgaggggtattcgggaaaacccacagaaatgcctcagatgaggtttggc 205

               
Query: 416 tggc 419
           ||||
Sbjct: 204 tggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)