Query= MSMg01no402_l03.b1 MSMg01no402_l03.b1 CHROMAT_FILE:
MSMg01no402_l03.b1 PHD_FILE: MSMg01no402_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:41 2005
(249 letters)
>mm_chr4_109132345_109132993
Length = 649
Score = 482 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Minus
Query: 1 gcctctgcttcccaaatgctaggattaaaggcacattttacattttcatttgtttctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcctctgcttcccaaatgctaggattaaaggcacattttacattttcatttgtttctttc 422
Query: 61 ctggcttatgttaagattagggcccaaagtataattgacaacatttgccattttatatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctggcttatgttaagattagggcccaaagtataattgacaacatttgccattttatatag 362
Query: 121 atgcttttttaaatatataacaaggaactaggaatatagtttggcctagcatgtatacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgcttttttaaatatataacaaggaactaggaatatagtttggcctagcatgtatacaa 302
Query: 181 ctatgggtttgatttccagcagaatacatgttatatagtaaaaatcagaatattttagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctatgggtttgatttccagcagaatacatgttatatagtaaaaatcagaatattttagaa 242
Query: 241 ctttattag 249
|||||||||
Sbjct: 241 ctttattag 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_l03.g1 MSMg01no402_l03.g1 CHROMAT_FILE:
MSMg01no402_l03.g1 PHD_FILE: MSMg01no402_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:41 2005
(244 letters)
>mm_chr4_108966341_108966984
Length = 644
Score = 414 bits (214), Expect = e-120
Identities = 239/250 (95%), Gaps = 6/250 (2%)
Strand = Plus / Plus
Query: 1 agaatgaaatcgtctattctgtt---tttc---ctattttgttcactctcctgcgcttgt 54
||||||||||| ||||||||||| |||| | |||||||||||||||||| ||||||
Sbjct: 195 agaatgaaatcttctattctgttttatttctcaccattttgttcactctcctgtgcttgt 254
Query: 55 gaaatctgcaattactgttttagcaaaagttgttaataaaattggtagttgctatttttc 114
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 gaaatctgcaattactgtcttagcaaaagttgttaataaaattggtagttgctaattttc 314
Query: 115 aaaagctaagtttcttttgcagctattttcatttgtgtgtgttgtgggtgtgtgatatat 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaaagctaagtttcttttgcagctattttcatttgtgtgtgttgtgggtgtgtgatatat 374
Query: 175 tcatgtgcatgtgtttttgtacatgcagaggtcagagggggatgtctagtgtctttctct 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcatgtgcatgtgtttttgtacatgcagaggtcagagggggatgtctagtgtctttctct 434
Query: 235 cttgttctct 244
||||||||||
Sbjct: 435 cttgttctct 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
