BAC Information

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BAC

Clone NameMSMg01-402M06
Chromosome4 (Build37)
Map Location 16,644,091 - 16,644,280
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402M06.T7 (MSMg01no402_m06.b1)MSMg01-402M06.TJ (MSMg01no402_m06.g1)
ACCAG501836AG501837
length797806
length of high quality
(start - end)
132 (70 - 201)190 (72 - 261)
definitionCHROMAT_FILE: MSMg01no402_m06.b1 PHD_FILE: MSMg01no402_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:46 2005CHROMAT_FILE: MSMg01no402_m06.g1 PHD_FILE: MSMg01no402_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGAAATTTTTCCGCAAATGGATACATCTGGAGGATATCATCTTGAGTG
AGGTAACCCAATCACAGAAGAACACACATGGTATGCACCCACTGATAAGT
AGATATTAGCCCAGAAACTTAGAATATTCAAGATACAATTTGCAAAACAC
ATGAAACTCAAGAATAAGGAAGAACAAAGTGTGGATATGTCGTTCCTTCT
TATAATGGCCAACAAAATACCCATGGAAGGGGTCACAGAGTCTATGTTCT
GTGCTGAGACAGATGGTTTGACCCTCCAGAGATTGTCCCACCCATAGACT
CATCCCATATACTACCACCAAACCTCGAGACCATTGTTTTTGTTATCAAG
GTTTTCGCTTACACGACCCTGACCCCGCTCTCTCTTGTGAGGCCATGTCT
TTGCCCGTCTCATACCCATGTTTATCCTCCTATTCCTCTTATGTATGCAT
TATTATGCCCCCCCCCGCCCCCCCTTTTTCCCCCGTTTTCCTAGTACCCT
TAATCTCGTCCCCCCCCCTTATCGCTCTGATCTTTTTTTTTCTACTCACC
GATGGTTCCCTTTTTCCTCCCTCCTGTCCATATCTCTCCCTCGTTAATAC
TCTTTCTCCCACTCTCTCTACATAATCCACTTTTCCCCCCCCCCTTTTTT
TCTCTTCCTCCACGGTATTCCCTTATCCACCCAATAACAACCTATATTTA
CCACACTTCCCCTCCTTTCTCTGTTTTTGCCCTTTCCTCCCTCCTTT
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGACATTCTGGAACACAGGCTATTTTT
GTGTTGCTTATGAAGTTTGGAAATTGGTTCTGACTGATCAACAGTGAAAC
ATGTGGAAGATTCCAATCTGTTTGTTGTGTATATACAGAGTTTAGACAAT
GGTAGTTTATATAGAGATTTGAACTTTTTTATATCCTTATAAGTGACTCC
TTATAAGTGACACAATTACTGGGGAAGGAAAGAAGATAAGTAAGAAACTC
TTCAATTGACATATATTTATCCAATGAAAAAGAAAAGATTTTTTTGTTTT
GTGTTTTGTTTTGTTTCGCTTTCGCCTGCATTTGAATGAAGCACAACTAA
GTTATCCTGTCCGGATTGATTCGATGCTCTCTGTAAGTCGCTTTCCTCCT
CATTTCCCCTTCTATCTCTCTCTTTCTCTACATCCATTTTCCTACTACAA
TACATGTTTTTTATCCCCTTATCCCCCTATGGAATCAAAATGGTCCTCCT
CCATTGTTTGTCTGTACCCTTTTTCTTTTAATACTCACCCATGGCTTTTT
TATTAAACCTTTCTTTTTTATCTGTTAATCTTTTTCAGCTTTTTGCCCTT
TTTTTTTTATTGGCCATTCTCAACACTCCTGTTTTCCTTGGTTAGGCTTC
CTTTCTTATCCACCATTTCTGCTCTTTTGTTTTTCCCCTCTCTCTAAAAT
ATTCATTAGAGCCATATTTTATCCCATCTCTTATTTTCCTCGGAATACCT
TTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_m06.g1 MSMg01no402_m06.g1 CHROMAT_FILE:
MSMg01no402_m06.g1 PHD_FILE: MSMg01no402_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:47 2005
         (190 letters)



>mm_chr4_16643891_16644480
          Length = 590

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgacattctggaacacaggctatttttgtgttgcttatgaagtttggaaattggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgacattctggaacacaggctatttttgtgttgcttatgaagtttggaaattggttct 260

                                                                       
Query: 61  gactgatcaacagtgaaacatgtggaagattccaatctgtttgttgtgtatatacagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgatcaacagtgaaacatgtggaagattccaatctgtttgttgtgtatatacagagt 320

                                                                       
Query: 121 ttagacaatggtagtttatatagagatttgaacttttttatatccttataagtgactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagacaatggtagtttatatagagatttgaacttttttatatccttataagtgactcct 380

                     
Query: 181 tataagtgac 190
           ||||||||||
Sbjct: 381 tataagtgac 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)