BAC Information

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BAC

Clone NameMSMg01-403G13
Chromosome4 (Build37)
Map Location 141,634,165 - 141,634,548
singlet/doubletsinglet
Overlap geneTmem51
Upstream geneNecap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1
Downstream gene9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403G13.T7 (MSMg01no403_g13.b1)MSMg01-403G13.TJ (MSMg01no403_g13.g1)
ACCAG502326AG502327
length853743
length of high quality
(start - end)
60 (250 - 309)466 (70 - 535)
definitionCHROMAT_FILE: MSMg01no403_g13.b1 PHD_FILE: MSMg01no403_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:41 2005CHROMAT_FILE: MSMg01no403_g13.g1 PHD_FILE: MSMg01no403_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGGGGCGCAAAACGAANCACTAATTCAAAAGCATCCGCGGAAANCAAA
GGTTTGCGAGACACTCTGCTCCAAAGGAAAAGGGGAAAAGTGGATGGAGA
ACACCTGACATCGCCCTCTGGACTTCCTGTGCACGCGTACAGGTGCGTGA
GCCTGCACACAGACATACACGCAGACGTCACGTCACATGGAAGTAACTAA
ACAAATAAATGAAAAAGAAAGAGAGAGAGCGCGCACGAGCGAGATTTATA
GAGAGAGAGAGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAATTATTTTTTTTAGAAGGACGCACGCCCCCGCCTACAATACG
CCTCTTCTCCCTCACCCCTCACCTGCCTATATAATTTTTCACCCTTCCCT
CTTTTCCCCTTTTTCCCCACCCCCCCTTCCTTTACCTCTTATTTTTCACG
TATCCACCTCCCACCCTCCTTCCTTCCCCCCCCTTTTTTTCTTTCTCTCC
CCTCTTCTCCCCCCTTTTATTCTACCTATTCCGCCCCTTTCCTTTTTTCT
TCATATCACCCCTTCCAACCTCTTACCTTTGTCCTACCCCACTCCCTTCT
ACCCATTCCCCCTTCTCCCCCCTTTTTCTTTTCCCCCTTCCGCCTTTATT
TTTTCATCATAATTATTTTTACCTTCCTCCATATACCCCTCTCATTTTCC
CTCCTTATCTCCTTTCTTCCTATTAACCCTCCTCTTCATCACGTCTCCTC
CTCCCGCTTTCTCTTTCTCTCCCTCATCTACCCTCTCTCCTTTCTTTCCC
GCCTCCCATTTCTCCCTCCACTTCCCTTCCACCACTACTTTTGTTCATAT
CTN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTAAAAGGGAACTGCCGAACCCAGGGAGTG
TACGCTGTCAAGCCAGGCTTTGCATTTCATGAGAGAACCTCCTGAAAAGT
TTTCCTCTGATTTCTGCAGCCATACCTTGGAATGAGTGTACCCCCCCTCT
CTTACACACACACACACACAAATAATAATAATAATGTGATTTTTAAATTG
ATTAAAATATGCTGGGAGTGGTGGCCCATGCCTTTAATCCTAGGACTAGA
GAGGCAGGAGTATCTCTGTGAGTTTGAGGTCAACCTGGTCTACATAGAGC
TCCAGGTAAGCCAGGGCTACATAGTGAAAACATGTTTCAAAATACTACTA
CTACTACTACTACTACTACTACTACTACTACTACTACTATTACTACTACT
ACTACTACTACTACTACTACTACTACTACTATTACTACTACTACTACTAC
TACTATAATAAAATTTAATGAAAAGTACTTTTCCTGGGTCAGTGAATTGA
CTCAGAAGGTAAAGGTGCTTGCCACCACGCTCACTGACCTGAGTTTGATC
CTTGGGCTGCCCTTGGCGGAAAGACAACGCTAACGCTGATCTCTATTATT
TAGACATGGCAAATAACTCCTAACCCACAACCCCCCTCAAACTGACTCCC
CATTATTCCATAAATATCCTCTTTACATCGTTTATAAAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_g13.g1 MSMg01no403_g13.g1 CHROMAT_FILE:
MSMg01no403_g13.g1 PHD_FILE: MSMg01no403_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:41 2005
         (466 letters)



>mm_chr4_141633965_141634833
          Length = 869

 Score =  630 bits (326), Expect = 0.0
 Identities = 361/384 (94%), Gaps = 20/384 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaagggaactgccgaacccagggagtgtacgctgtcaagccaggctttgcatttca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaagggaactgccaaacccagggagtgtacgctgtcaagccaggctttgcatttca 260

                                                                       
Query: 61  tgagagaacctcctgaaaagttttcctctgatttctgcagccataccttggaatgagtgt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagaacctcctgaaaagttgtcctctgatttctgcagccataccttggaatgagtgt 320

                                                                       
Query: 121 accc---cccctctctt--------------acacacacacacacacaaataataataat 163
           ||||   ||||||||||              |||||||||||||||||||||||||||||
Sbjct: 321 accccttcccctctcttacacacacacacacacacacacacacacacaaataataataat 380

                                                                       
Query: 164 ---aatgtgatttttaaattgattaaaatatgctgggagtggtggcccatgcctttaatc 220
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaatgtgatttttaaattgattaaaatatgctgggagtggtggcccatgcctttaatc 440

                                                                       
Query: 221 ctaggactagagaggcaggagtatctctgtgagtttgaggtcaacctggtctacatagag 280
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggactagagaggcaggaggatctctgtgagtttgaggtcaacctggtctacatagag 500

                                                                       
Query: 281 ctccaggtaagccagggctacatagtgaaaacatgtttcaaaatactactactactacta 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccaggtaagccagggctacatagtgaaaacatgtttcaaaatactactactactacta 560

                                   
Query: 341 ctactactactactactactacta 364
           ||||||||||||||||||||||||
Sbjct: 561 ctactactactactactactacta 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 869
Length adjustment: 10
Effective length of query: 456
Effective length of database: 859
Effective search space:   391704
Effective search space used:   391704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)