Query= MSMg01no403_h05.b1 MSMg01no403_h05.b1 CHROMAT_FILE:
MSMg01no403_h05.b1 PHD_FILE: MSMg01no403_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:44 2005
(508 letters)
>mm_chr4_93763215_93764122
Length = 908
Score = 899 bits (465), Expect = 0.0
Identities = 500/527 (94%), Gaps = 24/527 (4%)
Strand = Plus / Plus
Query: 6 aattttcagtgttacaattcttcctcaagtcaagctgttaccattgtcttcattcaacag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aattttcagtgttacaattcttcctcaagtcaagctgttaccattgtcttcattcaacag 241
Query: 66 tattcccagctatgacattcagtaggtccggtacaatgctataagtatatatagctatgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tattcccagctatgacattcagtaggtccggtacaatgctataagtatatatagctatgc 301
Query: 126 ctttagtctataggtatttgtgttctctgtattagcattcttttgaagggaatcctttgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctttagtctataggtatttgtgttctctgtattagcattcttttgaagggaatcctttgt 361
Query: 186 tagattgctttattattttccaaccaagggagagattacaaacactcttggaaagtcatg 245
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 362 tagattgctttattattttccaaccaagggagagattagaaacactcttggaaagtcatg 421
Query: 246 gctttccatttgtaggggtgtgtgtgtgtgtg------------------------catg 281
|||||||||||||||||||||||||||||||| ||||
Sbjct: 422 gctttccatttgtaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatg 481
Query: 282 tcagaaacagtagaacacaataggtctaacatgaaaggctaatacaaaatatataactga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcagaaacagtagaacacaataggtctaacatgaaaggctaatacaaaatatataactga 541
Query: 342 aggtaaaagatacagtgatgaaaaactcaaataaacatggtattattggagtattatgga 401
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 542 aggtaaaagatacagtgatgaaaaactcacataaacatggtattattggagtcttatgga 601
Query: 402 gttagaacacagtaatggggtgttatatgaagagatcagtagtcccaaatgttctaaaga 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gttagaacacagtaatggggtgttatatgaagagatcagtagtcccaaatgttctaaaga 661
Query: 462 ttaagaaaacataaccctcaaatttaataaaatctacttgatatctg 508
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttaagaaaacataaccctcaaatttaataaaatctacttgatatctg 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_h05.g1 MSMg01no403_h05.g1 CHROMAT_FILE:
MSMg01no403_h05.g1 PHD_FILE: MSMg01no403_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:44 2005
(473 letters)
>mm_chr4_93837521_93838393
Length = 873
Score = 868 bits (449), Expect = 0.0
Identities = 467/473 (98%)
Strand = Plus / Minus
Query: 1 atttttcacatgacatttcatttgggatttcataatatccaggactcaaaatttgcaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atttttcacatgacatttcatttgggatttcataatatccaggactcaaaatttgcaagg 614
Query: 61 actcctttttgtgatctggttacttactgcattaaatcaaggcctgacaattgccaggcc 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 613 actcctttttgtgatctggttacttactgcattaaattaaggcctgacaattgccatgcc 554
Query: 121 cccagttgaattaagtttcctattttttagttcagcagatgcaacagaatgaggtctggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 553 cccagttgaattaagtttcctattttttagttcagcagatgcaacagaatgaagtctggg 494
Query: 181 aatgaacactcagtcttggtacagaggatagaaagggaagcaatagatagctctggagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatgaacactcagtcttggtacagaggatagaaagggaagcaatagatagctctggagag 434
Query: 241 ggtatgtatgtaataaatgaagtatttcctgcaaatgacaaatgtgtatttgctgatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggtatgtatgtaataaatgaagtatttcctgcaaatgacaaatgtgtatttgctgatcaa 374
Query: 301 aggctcttccaaaattgctctgatgttaactgaatgagaagcctagaatctaaattaaag 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aggctcttccaaaattgccctgatgttaactgaatgagaagcctagaatctaaattaaag 314
Query: 361 caggaaagcaacagaagtcagacatagcaccaataacctgaagtatatggattctgaaag 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 313 caggaaagcaacagaagtcagaaatagcaccaataacctgaagtatatggattctgaaag 254
Query: 421 aggacacactaggagagagaatatccctttctctgcctctttctgtctctgtg 473
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 aggacacactaggagagagaatatccctttctctgtctctttctgtctctgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
