Query= MSMg01no403_h20.b1 MSMg01no403_h20.b1 CHROMAT_FILE:
MSMg01no403_h20.b1 PHD_FILE: MSMg01no403_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:47 2005
(521 letters)
>mm_chr4_36118102_36119022
Length = 921
Score = 942 bits (487), Expect = 0.0
Identities = 505/517 (97%), Gaps = 10/517 (1%)
Strand = Plus / Plus
Query: 5 gaattctcattcctcttaattcaatttcttatgaagcaaaatttacagagattctaaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattcctcttaattcaatttcttatgaagcaaaatttacagagattctaaatt 264
Query: 65 cattaaattctttcattgttcagcattaaagaaaaagacaaagaaaaattaataagctac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattaaattctttcattgttcagcattaaagaaaaagacaaagaaaaattaataagctac 324
Query: 125 ttatcttcttgatggtaaataagattaaaatattcaaatatcccagcaatggagattctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcttcttgatggtaaataagattaaaatattcaaatatcccagcaatggagattctc 384
Query: 185 taccattagaaagttcccaatactacgtaccaaactatgtaaacatgtattgtgctctaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccattagaaagttcccaatactacgtaccaaactatgtaaacatgtattgtgctctaa 444
Query: 245 accaaagtagcctagagaacacagaactatgagttaccttatctgctgagatattcatat 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 accaaagtagcctagagaacacagaactatgagttaccttatctgttgagatattcatat 504
Query: 305 ctgtgtggcttgtacctaaagtgaagttctagaaacttattctagaagtagattatcaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtgtggcttgtacctaaagtgaagttctagaaacttattctagaagtagattatcaat 564
Query: 365 atgaatagattcttgtcgcattatattatcagccataagcatgaggaacacacacacaca 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 atgaatagattcttgtcgcattatattatcagtcataagcatgaggaacacacacacaca 624
Query: 425 cacacacacacacaaccagtaatggactggataagtaaaatatggttgtactaaagtata 484
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caca----------accagtaatggactggataagtaaaatatggttgtactaaagtata 674
Query: 485 gacatatttcaaaatacccaataataaaatattaagt 521
|||||||||||||||||||||||||||||||||||||
Sbjct: 675 gacatatttcaaaatacccaataataaaatattaagt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_h20.g1 MSMg01no403_h20.g1 CHROMAT_FILE:
MSMg01no403_h20.g1 PHD_FILE: MSMg01no403_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:48 2005
(473 letters)
>mm_chr4_36315145_36316017
Length = 873
Score = 903 bits (467), Expect = 0.0
Identities = 470/471 (99%)
Strand = Plus / Minus
Query: 1 tctgagctcctctttaacatatgtagtctaaggcagtaggaaaaaagtatagaaatacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctgagctcctctttaacatatgtagtctaaggcagtaggaaaaaagtatagaaatacgt 612
Query: 61 gtactcctaggagcttccaggcccatttaattaaaatgccatgcaagatatccttttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtactcctaggagcttccaggcccatttaattaaaatgccatgcaagatatccttttggg 552
Query: 121 agtgtcacagggaatacagaaaatttagcaagctccaagaggtgagcttgcagaagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtgtcacagggaatacagaaaatttagcaagctccaagaggtgagcttgcagaagacaa 492
Query: 181 acctgttctactgtgacatgaaacctatttcactttagaaattactcatgtaaattagac 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 491 acctgttctactgtgacatgaaacctatttcactttagtaattactcatgtaaattagac 432
Query: 241 tttcctgcatggccagcaatagatgtatgacccagtatgttcgatatatatccatgtacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttcctgcatggccagcaatagatgtatgacccagtatgttcgatatatatccatgtacc 372
Query: 301 attggatataaaacctcaccttttatgtataaagagtatacattcttgggataaggagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attggatataaaacctcaccttttatgtataaagagtatacattcttgggataaggagga 312
Query: 361 ctttgaaagtgtcttcaaacaagtcaagtgaacagctggatctagtgtccttacatactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctttgaaagtgtcttcaaacaagtcaagtgaacagctggatctagtgtccttacatactt 252
Query: 421 tatatttacctagggttatatgcaatttatgtgtttttatgatattagttg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatatttacctagggttatatgcaatttatgtgtttttatgatattagttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
