BAC Information

Click to search

BAC

Clone NameMSMg01-404D02
Chromosome4 (Build37)
Map Location 131,684,767 - 131,685,202
singlet/doubletsinglet
Overlap geneOprd1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835
Downstream geneLOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404D02.T7 (MSMg01no404_d02.b1)MSMg01-404D02.TJ (MSMg01no404_d02.g1)
ACCAG502923AG502924
length744840
length of high quality
(start - end)
440 (36 - 475)202 (68 - 269)
definitionCHROMAT_FILE: MSMg01no404_d02.b1 PHD_FILE: MSMg01no404_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:46 2005CHROMAT_FILE: MSMg01no404_d02.g1 PHD_FILE: MSMg01no404_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GTATACCAGGCTGGCCTTGAACTCAGAGATCCACCTGCCTCAGCTGGGAT
TAAAGGTGGGCAGCACCACGGTCCAGACACTTGTGGACGGGCTTACATGC
TGGGGACACACAAGTCATTCTCCACTGAACCAGCAAAGCCACAGGAACAT
CACTATCCCCTTTTTACAGGTGGAGAAGGCTGAGGGGTGGAGAGGTGAAG
CTGACTAGCAGGCCTTAAATTAGGTCTCCAGTTCCTGGGATTCTAAAATT
CAAGTTCAATCCCTTTGTTTTACAAATGAAGGCTCTGAGGCTGTGCTATA
GCAGTGACCCCAGAGGCTGGGTGCACAGAGAGGGAACAGAGATGAGTCAT
CATAGCCTGTACCAGCAGCCCGGGGGTCCAGCTGGAGCTCCCTTTATTTG
CAGACTAAGGGTGATTGCTCTCCCTAAGGACAAAACAAGCCTGGTCGGGT
AAGGAGGATGACAGCTAACTGTGTCCCTGTCCACCACTCACGAGGGATGT
CACTTGTCCAGAAATCACCTACCTGTCTCAGTTCGGCAGATCCCATATAA
GGACCGCGCCTTAATATTACTAAATCCATAAAGCTCGCCCTATCTAGGTC
AACCAATATGTCTTATTTCCCTTCACCTCACATGTTTCTCCGAGATGATC
CTCTTTTTTGCCTCCACCCCCCCCCCCTCTTTTTTATTTTGCTT
TGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGATCTCAAATACTATGGAAGTATCTTAAAAGT
TACAGTCCTTGACTTGAAATGGAGTTAAGAAGCTGGTTTTGGTGATATAG
CCTTGAATCACCAGCGCTCTGAAGTCAGAGGCAGGTGCATCTCTGAGTTT
GAGGCCAGCCTGGTCTACACAGCAATTTCCAGGCTAGGGGGAGCTAAGTA
GTTTGGGGAGGAGGGGTGTGCTTTCATTCTTAGTATTGACATATTCTTAT
CACTTATATTTCATTTTTTTTGCCCTACTATTCACGGCCACTTCATCCAC
TCTCTATTTTTTTAATATACGCTTTGTTTTGTTTATTTGTTTTAAAACCC
TATTTCCTCACTTTCATTGATTTACCCCATTTCCCCCTTTTTGATCCTTT
TTTTATTCCCTCCATTCCCTTCTTTTCCCTGCCGTTTTTTGTCCCCTTTT
CCTATTTATGTCTCCCTTTTTCTTTTTTTCCCCTCCCCTATTATTTTACG
CCATTTATTCTCTTTATCTTTCACCCATTCACATTCATATCTCTCCCCTC
TTTCCACCTCTTTATTCCATCCCCCTCTTTAATTCCCCCTACCCCTCCCG
CTATTTTTCTCCTTATTCCTTTTTTCCTCCCCTTACCCCCCACCCTATCT
TTTTTCTCTTTTCTACTCTCCGTCTTCTTTTTTATTTTCTCTTTTTTCTT
TTTTTTATCTTCCCGTCCCCCCTCCCTCTTTTTTTATTTTCTCCTTCTTT
CTTTTTTCTTACTTCTCTACTTCTCTCCTCCTTCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_d02.b1 MSMg01no404_d02.b1 CHROMAT_FILE:
MSMg01no404_d02.b1 PHD_FILE: MSMg01no404_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:46 2005
         (440 letters)



>mm_chr4_131684564_131685403
          Length = 840

 Score =  781 bits (404), Expect = 0.0
 Identities = 428/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtataccaggctggccttgaactcagagatccacctgcctcagctggg 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagagcaggctggccttgaactcagagatccacctgcctcagctggg 263

                                                                       
Query: 64  attaaaggtgggcagcaccacggtccagacacttgtggacgggcttacatgctggggaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attaaaggtgggcagcaccacggtccagacacttgtggacgggcttacatgctggggaca 323

                                                                       
Query: 124 cacaagtcattctccactgaaccagcaaagccacaggaacatcactatcccctttttaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacaagtcattctccactgaaccagcaaagccacaggaacatcactatcccctttttaca 383

                                                                       
Query: 184 ggtggagaaggctgaggggtggagaggtgaagctgactagcaggccttaaattaggtctc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 ggtggagaaggctgaggggtggagaggtgaagctgactagcaggccttaagttaggtctc 443

                                                                       
Query: 244 cagttcctgggattctaaaattcaagttcaatccctttgttttacaaatgaaggctctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagttcctgggattctaaaattcaagttcaatccctttgttttacaaatgaaggctctga 503

                                                                       
Query: 304 ggctgtgctatagcagtgaccccagaggctgggtgcacagagagggaacagagatgagtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggctgtgctatagcagtgaccccagaggctgggtgcacagagagggaacagagatgagtc 563

                                                                       
Query: 364 atcatagcctgtaccagcagcccgggggtccagctggagctccctttatttgcagactaa 423
           | || |||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 564 aacaaagcctgcaccagcagcccaggggtccagctggagctccctttatttgcagacaaa 623

                           
Query: 424 gggtgattgctctccc 439
           ||||||||||||||||
Sbjct: 624 gggtgattgctctccc 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)