XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTC
TGCCCTCTTGAGTGCTGTATATATATATATATATTGGCTATTACTCCCCT
ATCTGATTTAGGATAGGTAAGGATTCTTTCCCAATCTGCTGTTGGCCTTT
TTGTTTTATTGATGGTGTCTTTTGCCTTACAGAAGTTTTGCAAATTTTAT
GAGATACCATTTGTAGATTCTCAATCTTACAACAAAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTTCCTGTATCTTGAGACTTTCCCCCACTT
TCTCCTCTATGAGTTTCACTGTCTCTGGTTTTATATGGAGTTCCTTGATC
CACTTACATTTGAGCTTAGTACAAGGAGATAGCAATGGATCAATTCACAT
TCTTTTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTCTCCACTGGATGGTTTTAGTTCCCTTGTCAAAGATCAAGTGA
CCATANGTGAGTGGGTTCATTTCTGGGGCTTCAATTCTATCCATTGGGCT
ACTGGGCTGTCCCCATACAGTACCATGCAGTTTTTATCACATTGCCCTGT
ATAAAAGCTTAAGTCAGGCATGGTGATTCCCCCCAAGGTTTTTTTTTTTT
TGGAAAAATTTTGTTTCCCAAGTTTTTTGTTTTCCCCACAATTTTCCAAA
CGCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAGATCACTTAGTATGCAAGTTTGACTAATAT
TCTCTTGAGTGAGATTTAGGTTTGCTGTTTTATAATTTAAAGATGATGTG
AATTATTATATTAACTCATTTCCATATGTCAGCATTTTCTCAGCATTTAT
ACCTTCGATTATCTATTTGCTTTGCAAGTATATATTCCAGTTGATATTAC
TATGAAAAGGAAGCTTGTATATAATATTTCAGATCTTGTGTATTTTAAAT
AGTAAAACAAAGGCAAACACTCCTCGCTTTTTCTCAGTTTGATAAATATG
CTATCAGTCGCCACAGTTTGGTTAAATAGTGCAGATCTGCAAATAGTGAC
TTTATTTCTACTAATACTTTGTTCAAACTCGACATATATAAAGCACTTCA
CACTGCTGAATATTCTGTCCTCAAACCATATCAGTAACCAGTGTGCTTCA
TGATTATGACAAATCCCAAATTTTTAAAAGTCTGTCAGTGATTTGTCATG
ATATATCTGTCCTTTGGTTTGTGCATAGATAAAGCAGCATATAATGTGTC
ATCTCCTTATCATTAAATAGCAAGCCTATGCGACATTTTATAAAAATAGA
CCTTCTCCAGGGAAAAAAATACCGAATTTGGATTAATTGGGCAAAGGAGT
CACCACTTGGTGGCCGGGATTGGATCTATTCTGGTAGGTTACCACCCCGA
AAGGAGN

Query= MSMg01no404_e18.g1 MSMg01no404_e18.g1 CHROMAT_FILE:
MSMg01no404_e18.g1 PHD_FILE: MSMg01no404_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:55 2005
         (498 letters)



>mm_chr4_93063202_93064099
          Length = 898

 Score =  874 bits (452), Expect = 0.0
 Identities = 486/498 (97%), Gaps = 2/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagatcacttagtatgcaagtttgactaatattctcttgagtgagatttaggtttgct 60
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 568 cagagatcacttactatgcaagtttgactaataatctcttgagtgagatttaggtttgct 509

                                                                       
Query: 61  gttttataatttaaagatgatgtgaattattatattaactcatttccatatgtcagcatt 120
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 508 gttttaaaatttaaagatgatgtgaattattatattaactcatttccatatgtcagcaat 449

                                                                       
Query: 121 ttctcagcatttataccttcgattatctatttgctttgcaagtatatattccagttgata 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 448 ttctcagcatttataccttcgattatctatttgctttgcaattatatattccagttgata 389

                                                                       
Query: 181 ttactatgaaaaggaagcttgtatataatatttcagatcttgtgtattttaaatagtaaa 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttactatgaaaaggaagctcgtatataatatttcagatcttgtgtattttaaatagtaaa 329

                                                                       
Query: 241 acaaaggcaaacactcctcgctttttctcagtttgataaatatgctatcagtcgccacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 acaaaggcaaacactcctcgctttttctcagtttgataaatatgctatcagtcaccacag 269

                                                                       
Query: 301 tttggttaaatagtgcagatctgcaaatagtgactttatttctactaatactttgttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttggttaaatagtgcagatctgcaaatagtgactttatttctactaatactttgttcaa 209

                                                                       
Query: 361 actcgacatatataaagcacttcacactgctgaatattctgtcctcaaaccatatcagta 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 208 actcgacatatataaagtacttcacactgctgaatattctgtcctcaaatcatatcagta 149

                                                                       
Query: 421 accagtgtgcttcatgattatgacaaatcccaaatttttaaaagtctgtcagtgatttgt 480
           |||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 148 accagtg--cttcatgattatgacaaatcccaagtttttaaaagtctgtcagtgatttgt 91

                             
Query: 481 catgatatatctgtcctt 498
           ||||||||||||||||||
Sbjct: 90  catgatatatctgtcctt 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)