BAC Information

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BAC

Clone NameMSMg01-404I05
Chromosome4 (Build37)
Map Location 103,313,997 - 103,314,506
singlet/doubletsinglet
Overlap genenone
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
Downstream geneEG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404I05.T7 (MSMg01no404_i05.b1)MSMg01-404I05.TJ (MSMg01no404_i05.g1)
ACCAG503163AG503164
length738731
length of high quality
(start - end)
248 (70 - 317)510 (69 - 578)
definitionCHROMAT_FILE: MSMg01no404_i05.b1 PHD_FILE: MSMg01no404_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:13 2005CHROMAT_FILE: MSMg01no404_i05.g1 PHD_FILE: MSMg01no404_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGCGAGCGCGGAATTC
CAGCCAATGCCGCCAGGCATGTAGTACCAGTACTCACTCTGGTAATGACT
GTGACTCAGAGTGTATGAACAATAGTAGACAGTCCTATCAGGTCCACTCT
CTCCCACGATCCTCACGGCAACCCTAAGATCAGCAGAATTAGCCCCACCT
TAGAGATGAAAAATACTGAGGCTCCAGGCCACACACTTGATGGGAAAGCT
TCTGTAGTCTTTTATTACAGAAAGAAGCATTCTGTTCTGCCTTCATTCAG
GCAAAAGTACACATCTCGGTCTTTATACCAAGAATTCTCAGAGCAATTAG
ACTCTTCTGCTCCAAACACAACAGAGCCTTCTTCAAAGTGCCACACATGC
TTGGAAGAGCACACACATAAAAGTGTAATGTGAACACTTGTCGCTCTTAC
CCCCTTGTTGCAAAAGAAGAAGAAGAATGTTTATGCACCATAGAAAATCT
AGCTGCATTTCCCAGTTTAATTAGTTTGTCAAGTGCCTGCTATATTTCCA
TGTTAATTTCCCTGTATCCCATTTCAGTTTCTTTATATTCCACTTCCATT
ATTTGCTTAAAAATTGAGTGAGGGACTATGACTATGTTTAATCTCCACTC
GACTCTTTTAACTTTTACTGATGCTCCATTTTGTAATACCCCTGCTGGTC
CCCTAGTTACTTCTTCGGACCCCCTCTCCCCCTGGTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATCTCAGGGAGGTTGGCAGGTGGGCAAGTT
AGCCTAGTGAGAATCAGTGAACTCTGATCTAGGAGCAGTTAGGTCTTCGC
TCCCAGCTCAGGTCCTCCCCTGAGTCAGGGGACACTGTTGACCCTTTTGA
AGGTTTTATATCCCATGTTAACCAGGTACCCACTGTACCAGAGTGGTTAA
AATCAAACTTTAGCATGACTCCCTTACAGTATCACTTTTTGCCTAGCTAG
CTCCGATCTGCTCCTTTATTTGTCACATGAAAGTTTAGGGGCCAGACCTC
GCCTCATCACCCATGTTCACCATGTTTTCTGACCCCTTCTCTGGCCATCT
TTTGAGATTCAGCACTCATGTCCCTTTGGCTGGTTCTCTTCCCTGTTGCC
CCCTGCTTATAAAGACACCTAATCTTTATGCCCCATCACCACCAATGGTC
CTCCTTATCACTAAGCACAATTTCTGTAAAGCCACCAACCCAGGTCCCAG
AGCCCTACCTCCCAGATGGTCTCTAGATGCTCGTGGACGGGCTAAACATT
GCCTGTTCTCAGCTCATAATTTGATGCTCCCAACTTTATTTGCTATATGG
TCTCCTATTTTCTAAAACGATCAACAAAACCACTGTTTTCTCTTTTTCGA
TAAATGAACCCCTATATTCTCTTGTGGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_i05.g1 MSMg01no404_i05.g1 CHROMAT_FILE:
MSMg01no404_i05.g1 PHD_FILE: MSMg01no404_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:13 2005
         (510 letters)



>mm_chr4_103313797_103314706
          Length = 910

 Score =  955 bits (494), Expect = 0.0
 Identities = 506/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatctcagggaggttggcaggtgggcaagttagcctagtgagaatcagtgaactctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatctcagggaggttggcaggtgggcaagttagcctagtgagaatcagtgaactctgat 260

                                                                       
Query: 61  ctaggagcagttaggtcttcgctcccagctcaggtcctcccctgagtcaggggacactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggagcagttaggtcttcgctcccagctcaggtcctcccctgagtcaggggacactgt 320

                                                                       
Query: 121 tgacccttttgaaggttttatatcccatgttaaccaggtacccactgtaccagagtggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacccttttgaaggttttatatcccatgttaaccaggtacccactgtaccagagtggtt 380

                                                                       
Query: 181 aaaatcaaactttagcatgactcccttacagtatcactttttgcctagctagctccgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatcaaactttagcatgactcccttacagtatcactttttgcctagctagctccgatc 440

                                                                       
Query: 241 tgctcctttatttgtcacatgaaagtttaggggccagacctcgcctcatcacccatgttc 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcctttaggggtcacatgaaagtttaggggccagacctcgcctcatcacccatgttc 500

                                                                       
Query: 301 accatgttttctgaccccttctctggccatcttttgagattcagcactcatgtccctttg 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accatgttttctgactccttctctggccatcttttgagattcagcactcatgtccctttg 560

                                                                       
Query: 361 gctggttctcttccctgttgccccctgcttataaagacacctaatctttatgccccatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggttctcttccctgttgccccctgcttataaagacacctaatctttatgccccatca 620

                                                                       
Query: 421 ccaccaatggtcctccttatcactaagcacaatttctgtaaagccaccaacccaggtccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaccaatggtcctccttatcactaagcacaatttctgtaaagccaccaacccaggtccc 680

                                         
Query: 481 agagccctacctcccagatggtctctagat 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 agagccctacctcccagatggtctctagat 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)