Query= MSMg01no404_k06.b1 MSMg01no404_k06.b1 CHROMAT_FILE:
MSMg01no404_k06.b1 PHD_FILE: MSMg01no404_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:23 2005
(366 letters)
>mm_chr4_149082423_149083188
Length = 766
Score = 650 bits (336), Expect = 0.0
Identities = 357/364 (98%)
Strand = Plus / Plus
Query: 3 ggaattctctgtttttcccttggaggctggccacccgtattacatggtaccagaccggct 62
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctctgttcttggcttggaggctggccacccgtattacatggtaccagaccggct 262
Query: 63 ctgctaggatcattggcctcctgtgactcccaggttgggacaaccattaagaaacttagt 122
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 263 ctgctaggatcattggcctcctgtgacttccaggttgggacaaccattaagaaacttagt 322
Query: 123 aacaagataggcaggcttgtacttatgtctaccagccttcctaggtgctgtaagactagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacaagataggcaggcttgtacttatgtctaccagccttcctaggtgctgtaagactagg 382
Query: 183 ttcaggattattctgtctgttcaagaaaaagaaagagagctggggtgtaggtcttataca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcaggattattctgtctgttcaagaaaaagaaagagagctggggtgtaggtcttataca 442
Query: 243 gtgcttgtggagtaagcccaagaccccagcacctgtttctacctccctgatgtgtggatt 302
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 443 gtgcttgtggagtaagcccaagaccccagcacctgcttctacctccctgatgtggggatt 502
Query: 303 aaaggagtccaccaccactggccagtttatatttaactttgtaaaggaatattctttttt 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 aaaggagtccaccaccactggccagtttatatttaactttgtaaaggtatattctttttt 562
Query: 363 cccc 366
||||
Sbjct: 563 cccc 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_k06.g1 MSMg01no404_k06.g1 CHROMAT_FILE:
MSMg01no404_k06.g1 PHD_FILE: MSMg01no404_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:23 2005
(246 letters)
>mm_chr4_149260005_149260649
Length = 645
Score = 242 bits (125), Expect = 2e-68
Identities = 183/209 (87%), Gaps = 15/209 (7%)
Strand = Plus / Minus
Query: 49 caga-agctgggcatggctaacacatccatccggtgtaccaagagtgtgcagaagcatcc 107
|||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||||
Sbjct: 538 cagagagctgggcatggctaactcatccatcgggtgcaccaagagtgtgcagaagcatcc 479
Query: 108 atggatgcattcagggcaacgtg---------gagtggggggcggggcatacgaaggagg 158
|||| |||||||||| ||||||| | |||||||| | |||||||||||||||
Sbjct: 478 atgggtgcattcaggccaacgtgtgtgtgtgtgtgtgggggg-gtggcatacgaaggagg 420
Query: 159 ccacagaa--gaattaagcctctggttcttctctgggtgtgtggcatggttcatttgact 216
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 419 ccac--aagggaattaagcctctggctcttctctgggtgtgtggcatggttcatttggct 362
Query: 217 tcttatgtgggacaggaaagctgtggagc 245
||| ||| |||||||||||||||||||||
Sbjct: 361 tctcatgggggacaggaaagctgtggagc 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
