BAC Information

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BAC

Clone NameMSMg01-404O05
Chromosome4 (Build37)
Map Location 35,730,851 - 35,731,202
singlet/doubletsinglet
Overlap geneLingo2
Upstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O05.T7 (MSMg01no404_o05.b1)MSMg01-404O05.TJ (MSMg01no404_o05.g1)
ACCAG503448AG503449
length747760
length of high quality
(start - end)
352 (65 - 416)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no404_o05.b1 PHD_FILE: MSMg01no404_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:42 2005CHROMAT_FILE: MSMg01no404_o05.g1 PHD_FILE: MSMg01no404_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATAATTTTCAAGCCAAATGTTGACAGACTACATAGGGCTCTTATATAATA
ACTCAGGTTTGGGGACAAAGAGTAAGATGTGTCTAAAATATGAAGAGTTT
AAAAAGAATCATCAATGAAATACAAAAATAGGACACTCTATATGTGAAAA
TAGATCACTTACTCTAAAGCATGGAGACTGAAGAAGCAGTGCTCAGAAAG
AAAGCTCAGATATCTGATGTTAAAAATATCAGCAATACACAGCTCTGAAA
CTGGCAAAGCAGTTGCTGGTCAAAATGTTTATCCCTAGCAATAAACACCA
GTTGTTCCAGAGTCCTTTCAAGAAAAGTATATGCTAGGACATCCTTCTTG
ATTTAATTATGCAGTCAGAGCCACAGTAGACTCTGCAGCTTCATTTTTTG
GTCCATAGCAATTGGATTTCTCTGTACTTTATTCATTGAGTTTCTGCGTA
GGATTATATTTATGTTAAAGACTGGCCACCGCGCTTTTTTTGTAATCTCC
TTAATTAATGTTTAAGATTTATTTTTCTTATTTCACCTGTCTTGCCCTTT
ACTTTTCACAACTTTTTTTTTTCTTTGTCCTGACTAACAAATTTTCCCTA
TCTTCATTTTTTCTACCCCCCCCCCCCCTTTTTATCCATATTTCCCCCTC
CTTCTCCCTTTATTTCTTTTTCCTCTCCCCCTTTTATTTCTTTTTTT
ATTGGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGATACATAATAAAATTGAGAAAAACTAAA
GAAACAGTGATAAAATAATGTCTAATGACATATTGCTATATCATAGATAA
GTGTTTTGCTTTATTCTTATTCAAGAAGATTTTCCTTGCAATAGATGAAA
ATTGTCACAGAGGCCCACAACTGGGCAATGTGTAGAGAGTAAGAGACTAT
ATTGAGCATTCAGCTCTAAATATGATGTCTTTATCAAACGCCTCCCCTGA
AGTCTTAGGGATATTTTCTGAGATGGAGGTGGAAAGTTAAGAGCCAGAGG
TGGTGGATGTCTTAAAAAAACTGTATTCCAGGCACAACAGGACTGATATG
AATGGAGGCCACCATAATCTGTGAGGAGTTGGCCAAATGTAACATACAAT
ACAATATATTATATAAAAAAGTTCTACTTAAACAGCATTATGTGACCTTC
TAATTTAATTTTACTGATTCTACAACCCATTATCAACTTGCCTGTTTCTA
TTTTTCCATTCTTATCATCACTCGTCTTTTTTTCCCCCCACTCCTTTTTA
ATTCCTTTATTACACCCCTCCCTGCTATTATCCCCCTCCTATTTTATCTA
TCACTTTCCTTTTTACTTTTCTTTTTTTTTTTTTTTTCCCTCATTAACTT
TTTCCTCTTTTTTTTCCTATCATTTAATTTATCCCCCCTTATTTTTTTCT
TTATTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o05.b1 MSMg01no404_o05.b1 CHROMAT_FILE:
MSMg01no404_o05.b1 PHD_FILE: MSMg01no404_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:42 2005
         (352 letters)



>mm_chr4_35730651_35731402
          Length = 752

 Score =  619 bits (320), Expect = 0.0
 Identities = 344/352 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgttgacagactacatagggctcttatataataactcaggtttggggacaaagagta 60
           ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||
Sbjct: 552 aaatgttgacagagtacatggggctcttatataataactcaggcttggggacaaagggta 493

                                                                       
Query: 61  agatgtgtctaaaatatgaagagtttaaaaagaatcatcaatgaaatacaaaaataggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agatgtgtctaaaatatgaagagtttaaaaagaatcatcaatgaaatacaaaaataggac 433

                                                                       
Query: 121 actctatatgtgaaaatagatcacttactctaaagcatggagactgaagaagcagtgctc 180
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actctgtatgtgaaaagagatcacttactctaaagcatggagactgaagaagcagtgctc 373

                                                                       
Query: 181 agaaagaaagctcagatatctgatgttaaaaatatcagcaatacacagctctgaaactgg 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 372 agaaagaaagctcagatatctgatgttaaaaataacagcaatacacagctctgaaactgg 313

                                                                       
Query: 241 caaagcagttgctggtcaaaatgtttatccctagcaataaacaccagttgttccagagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caaagcagttgctggtcaaaatgtttatccctagcaataaacaccagttgttccagagtc 253

                                                               
Query: 301 ctttcaagaaaagtatatgctaggacatccttcttgatttaattatgcagtc 352
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 ctttcaagaaaagtatatgctaggacatccttcttgaattaattatgcagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)