NAATCATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACATATTCCAGTATTGTGTGTGCTACCCCTCATACCATGTAT
AACTTTCAGCTAGTTCATGGTGTTAAAAATCCCAAGAGCTCCCAGGAACT
AAACCACCAACAAAAGAGCAGCAGAGGATGGCCTTGTCAGACATCAATGG
GAGGAGAAGCCCTTGGTCCTGGGAAGGCACAATGCCCCAGTATAGAGAAA
TGCCAGGGCAAGGAGGTGGGTGGGTGAGCACCCTCATAGATGTGGGGGGA
GGGAGGATGGGTTATNATTTTTTTTTTNNNNNNNNNNNTNNNNNNNTTTT
NNTTTTTTTTTTTTTTTCTNCTCTTTTTTTTTCTTTTTTTTTTTTTTTTN
CTTTTCTTTTTTTNTCCNNTCCCTCCTCCCCTTCTCTCTTCTCCCTTTCC
TTTCCTCTTTTCTCTTTCCTTCTCCCCCCCTTCTTCCCTTTTTTTTTTTT
CCTTTCTTTTTCTCCCTTCTTTCTTTCTCTCCCCCCTCCTCCCCTCCTTT
TTTTCCCCTTCTCTTTTTCCTCCTCTCTTCCTCTCTTCTTCCCCCCCCCC
TTTCCTTTTTCCCTCCCTCTTTTTTCCTTTCCCTCCCTCCTCTCTCCTCC
TCCCCCTTCTTCTCTCCTTTCTTTTCCCTCCCTCTTCCCTTTCCCTTTTT
TCTTTATTTCTCCCTCCCTCCTCTCTCTTTTTCCTCTCTCTTTCCTCTCT
TTTTCCCTTCTTCCCTCTCTCTCCTCTCCCTTTTTTTCCCCTCCCTCTCC
TTTTTCTTCTTCTTTTTTTTCTCCCCTCTCTTCCTCTTCCTTTTTTTTTT
TCCCN

NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCAAATGTTAGCCACATAT
TCACCAGAATGTTGTTTTCTGTTGAGGAATGTTCTTCAGTTCCTTAGACG
ATAGTAAAGTATTAGACAAATATTTTTAGACATTTTCTTATATATTACTG
ATGTGGGAGCACCTTACACCTTTACAATGAACATCTTTTATGACTTTAAT
ACAAATTTTGAGATTAAAAGTTTGAAACGATTTTTAGCTATCAGCCTTAG
ATTATTTCTAGACAGTAATGGCTAAAGTAGTCTCACATTATTGTGTTATT
ATACTTCTAAAAGTGAGCCATGAGCTTTCTCTTCAGACATGCATGCTATC
AATAAGGCGAATTGAAATAAGGTGTCATCAATAAGGTGACTTGAAAGAGG
AAAATATTCTGATCAGAAATCTAGTCTCTGCTTATTTTGGCCTTTTCATA
GTTCTGATTTCACCCTGTTATGAGAAATGGTTGGCTTATAAGAAATGATA
TTGAGGAGTTTGGGAGATGACTGAAAAAATTACAGCAACTGGTGTTTCTG
CCACAGAACCAAAGTTGGTTTCTACTCTCCTTATACCGGTTCCAATTTGC
CTAATACTCCGCGTTTTTAGGCCTTCCTTAACCCCCTTTTGGCCCTTGTA
GGGCCTGTCCCCCTTTGGTTTCTCATTTCCCTTGTCTTCTCTGTTTTTCC
CCCCTTTTTTCG

Query= MSMg01no405_b14.g1 MSMg01no405_b14.g1 CHROMAT_FILE:
MSMg01no405_b14.g1 PHD_FILE: MSMg01no405_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:59 2005
         (451 letters)



>mm_chr4_91667873_91668723
          Length = 851

 Score =  864 bits (447), Expect = 0.0
 Identities = 450/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcaaatgttagccacatattcaccagaatgttgttttctgttgaggaatgttcttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aggcaaatgttagccacatattcaccagaatgttgttttctgttgaggaatgttcttcag 592

                                                                       
Query: 61  ttccttagacgatagtaaagtattagacaaatatttttagacattttcttatatattact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttccttagacgatagtaaagtattagacaaatatttttagacattttcttatatattact 532

                                                                       
Query: 121 gatgtgggagcaccttacacctttacaatgaacatcttttatgactttaatacaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gatgtgggagcaccttacacctttacaatgaacatcttttatgactttaatacaaatttt 472

                                                                       
Query: 181 gagattaaaagtttgaaacgatttttagctatcagccttagattatttctagacagtaat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 471 gagattaaaagtttgaaacgatttttagctaccagccttagattatttctagacagtaat 412

                                                                       
Query: 241 ggctaaagtagtctcacattattgtgttattatacttctaaaagtgagccatgagctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggctaaagtagtctcacattattgtgttattatacttctaaaagtgagccatgagctttc 352

                                                                       
Query: 301 tcttcagacatgcatgctatcaataaggcgaattgaaataaggtgtcatcaataaggtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcttcagacatgcatgctatcaataaggcgaattgaaataaggtgtcatcaataaggtga 292

                                                                       
Query: 361 cttgaaagaggaaaatattctgatcagaaatctagtctctgcttattttggccttttcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttgaaagaggaaaatattctgatcagaaatctagtctctgcttattttggccttttcat 232

                                          
Query: 421 agttctgatttcaccctgttatgagaaatgg 451
           |||||||||||||||||||||||||||||||
Sbjct: 231 agttctgatttcaccctgttatgagaaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)