BAC Information

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BAC

Clone NameMSMg01-405B16
Chromosome4 (Build37)
Map Location 68,269,599 - 68,407,276
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433715, Tcp1-ps1
Downstream geneDbc1, LOC622491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B16.T7 (MSMg01no405_b16.b1)MSMg01-405B16.TJ (MSMg01no405_b16.g1)
ACCAG503614AG503615
length764771
length of high quality
(start - end)		501 (50 - 550)402 (80 - 481)
definitionCHROMAT_FILE: MSMg01no405_b16.b1 PHD_FILE: MSMg01no405_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:00 2005CHROMAT_FILE: MSMg01no405_b16.g1 PHD_FILE: MSMg01no405_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,269,599 - 68,270,095)(68,406,875 - 68,407,276)
sequence
TTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAACCTAACAATTCCCTCCAAAAGAATTCTCTAGACACAG
ATTGCTTTACTAAAAAGCCTACCAGATATTTAAATAAAAATTACTGTCAA
TGCTGCATAACTGTATTAAGAAAACAGAAAAAAGAACACATTGACTTGTT
TTTGAAAGCTAGTATTCATACAAAAATCAGACAAGGACAGTACTAAAAAT
AAAAACAAATAGAATTGAAGATCAACATCCCTTATGAAAACAGATATGAT
TTATATCTTTAACATATTATTAGAAAATTAAAGTCAGCCATAAACAAGAC
TAATTTTTATGCCATGATTAAGTAGAGTTTACTCTAGATATTACAGGTGA
TTTGATACTTGATAGTCAATCCTTGTGACTAATGAATAATATATTATGTA
GTCATTGTAATAGGTTTGGTATATTCATTGTTCATGAGCTCCTTGGATAA
TGTTAGGCTATCGATGTTGAATAATACTAGATGACTCATGGTAGGAATCA
TAAGTACCCCTAGGGTGAGGACTAGTTAACAGATAGGTCACATATATGTT
AACAAGGTTAAATCCTGATCCAGCCTGATGCCCCAGGAAGAGGCCGAAAT
TTAAGAGTTAGTCNTCCTAATCACGCCTGGGGGGATGAAACCCCCAATAA
AAATTCCTGCCCCGGTGAGAAACCTTGAAATTTCCTCACCTTGAAAAAAA
CCCAGAAATTTTCC

NNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATAAGTCCTCTCAGACA
TCTGATGTGAGGCAGAGTGAAGGGAAACATCACAGAGTGTAGAGTGTGAC
ATCTGATGTGTCAGAGATTCCCATTCTCAGACTGTGGTGCATCCCTCACT
GTTAACAGAAGCAAGGCCTGACACTGCCATGATCCTCTTTCAAATGTCCT
TTTGTTCTGTTGTTGACCCTATTCAATAAATAAGTGAGAAGGTCATTGGT
GAGCAGGGTGAAGAGTGGGCATCACTACAATCAGGTCTCTTCCACTTTGC
CCCGTGAAGAAAACCCATTTCATGTGTGCACCTGAATCTTGAGTGCTAGG
CACAAATGTCTAATTGTCCAAAAGATCATGAAAACCAGATGTTCAGGGTC
ACTTGAATTTCACAAGAGAGATAGTGGACTCTCAGAATGTCTTCGTCCTT
ATGACATTGGCAATCAGGACCTATAAAACTCCTTTTAAAAAAAAAGTTTC
CTCTACTCATTTCTTCTACTAAAACATGGAACTCCCTACCTACTATGAAT
TTAAATTTTTCCTTTTTAAAAATATTCTCCCTCTTCTCTTAAACAATATT
GTTTCATTGGGCTTTTCCTTTTATTCCTCCCTCTTTTTCTTTTTTTTCAC
CAAATATCCCTCTTTTTCCTCACTTTTTATTTTTTTTCCAATTTCTTTTC
TCTATTTCCCCCCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b16.b1 MSMg01no405_b16.b1 CHROMAT_FILE:
MSMg01no405_b16.b1 PHD_FILE: MSMg01no405_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:00 2005
         (501 letters)



>mm_chr4_68269395_68270295
          Length = 901

 Score =  953 bits (493), Expect = 0.0
 Identities = 496/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaacctaacaattccctccaaaagaattctctagacacagattgctttactaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaacctaaaaattccctccaaaagaattctctagacacagattgctttactaa 264

                                                                       
Query: 65  aaagcctaccagatatttaaataaaaattactgtcaatgctgcataactgtattaagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagcctaccagatatttaaataaaaattactgtcaatgctgcataactgtattaagaaa 324

                                                                       
Query: 125 acagaaaaaagaacacattgacttgtttttgaaagctagtattcatacaaaaatcagaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagaaaaaagaacacattgacttgtttttgaaagctagtattcatacaaaaatcagaca 384

                                                                       
Query: 185 aggacagtactaaaaataaaaacaaatagaattgaagatcaacatcccttatgaaaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggacagtactaaaaataaaaacaaatagaattgaagatcaacatcccttatgaaaacag 444

                                                                       
Query: 245 atatgatttatatctttaacatattattagaaaattaaagtcagccataaacaagactaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatgatttatatctttaacatattattagaaaattaaagtcagccataaacaagactaa 504

                                                                       
Query: 305 tttttatgccatgattaagtagagtttactctagatattacaggtgatttgatacttgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttatgccatgattaagtagagtttactctagatattacaggtgatttgatacttgat 564

                                                                       
Query: 365 agtcaatccttgtgactaatgaataatatattatgtagtcattgtaataggtttggtata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcaatccttgtgactaatgaataatatattatgtagtcattgtaataggtttggtata 624

                                                                       
Query: 425 ttcattgttcatgagctccttggataatgttaggctatcgatgttgaataatactagatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcattgttcatgagctccttggataatgttaggctatcgatgttgaataatactagatg 684

                            
Query: 485 actcatggtaggaatca 501
           |||||||||||||||||
Sbjct: 685 actcatggtaggaatca 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_b16.g1 MSMg01no405_b16.g1 CHROMAT_FILE:
MSMg01no405_b16.g1 PHD_FILE: MSMg01no405_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:00 2005
         (402 letters)



>mm_chr4_68406675_68407476
          Length = 802

 Score =  739 bits (382), Expect = 0.0
 Identities = 397/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaataagtcctctcagacatctgatgtgaggcagagtgaagggaaacatcacagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tttaataagtcctctcagacatctgatgtgaggcagagtgaagggaaacatcacagagtg 543

                                                                       
Query: 61  tagagtgtgacatctgatgtgtcagagattcccattctcagactgtggtgcatccctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tagagtgtgacatctgatgtgtcagagattcccattctcagactgtggtgcatccctcac 483

                                                                       
Query: 121 tgttaacagaagcaaggcctgacactgccatgatcctctttcaaatgtccttttgttctg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 482 agttaacagaagcaaggcctgacactgccatgatcctctttcaaatgtccttttgttttg 423

                                                                       
Query: 181 ttgttgaccctattcaataaataagtgagaaggtcattggtgagcagggtgaagagtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 422 ttgttgaccctattcaataaataagtgagaaggtcattggtgagcagggtgaaaagtggg 363

                                                                       
Query: 241 catcactacaatcaggtctcttccactttgccccgtgaagaaaacccatttcatgtgtgc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 362 catcactacaatcaggtctcttccactttgccccatgaagaaaacccatttcatgtgtgc 303

                                                                       
Query: 301 acctgaatcttgagtgctaggcacaaatgtctaattgtccaaaagatcatgaaaaccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acctgaatcttgagtgctaggcacaaatgtctaattgtccaaaagatcatgaaaaccaga 243

                                                     
Query: 361 tgttcagggtcacttgaatttcacaagagagatagtggactc 402
           |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 242 tgttcagggtcacttgaatttcacaagagagaaagtggactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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