BAC Information

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BAC

Clone NameMSMg01-405B22
Chromosome4 (Build37)
Map Location 94,614,041 - 94,784,088
singlet/doubletdoublet
Overlap geneMysm1, LOC100039265, LOC665029, Jun
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252
Downstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13, LOC242546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B22.T7 (MSMg01no405_b22.b1)MSMg01-405B22.TJ (MSMg01no405_b22.g1)
ACCAG503626AG503627
length790873
length of high quality
(start - end)		465 (71 - 535)191 (77 - 267)
definitionCHROMAT_FILE: MSMg01no405_b22.b1 PHD_FILE: MSMg01no405_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:01 2005CHROMAT_FILE: MSMg01no405_b22.g1 PHD_FILE: MSMg01no405_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,614,041 - 94,614,504)(94,783,901 - 94,784,088)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTCCTCACTTTCTACAATCTGTGATTTTGGCCCTTTTAGCAGTT
ACATTTACAGAGACAAATTATCTCTAAAGTTTTAAAAACAAACAATGCAA
ACAACCAAGCACGTAAGCCTGTGGGTTTAGGGATGAAGCACAGGGCCCAG
ACAGTGTGCAAGGTTCAAATCGGAGCCCATCACAACCAAAGGAACAAAAC
GAGCACTCAGTACATAGCGCATGGGCAGTTTTCTGGGGATGCACACATTG
GTCTTTCAATAGTATATAGAAAAAAGCAGCAGAAAGAACTTGGGAAGTTT
AATTTTTAGGATTATTCCCAAAAGACTAAATAAACTAAAATAAAAGATTA
AACACAAACCAAAGATGTTAACAGTCTATTCATCTTAATCAGAAGTAGAA
AAAAAATTCTAAACCTTTAGAATTTTCAAGTACAAAGTTAGAAATGACCG
TTTAAATTCAAATTACATTTATACTATATTTCTTACAAACAAGTGACCAT
TACAGTTCCAAGGGAAACACGGTACTTATAAAGTTATAAAAAAAAAGGTT
CTTCCTGTACACCATAATAACCCGCCGAGCAATATATCAGTTTAAACTGG
AAAATGCTTTCTCTAAAAAAATTATTTTTTAATCCCGATTAAACCCCTCC
TCTTTACAATGGAACCATTATGGGAAAAATTTGGCATTGTTTCTTCCCAC
CCTTGGAGAAATCCCTCCACATTGACACTCTTTTTTATCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACAACAAACAGGACAGTGACAA
AGCAGAGAGAAAGTGGGGACAATGGAAGGAAATGGTGAAAGATTCCTGAG
CCAGTGTGGGGTTGCAGGAGTCTACTTCCGGGAACACAGTCCAGGGACAA
AGGCAACTGATGCTGAGAGGTCGACACTTTGTAAGTACATTTCAGTGTGT
GTGGGGTGGGGTGGTTNNTNTTTTCTTTTCTTTCTCCTTTTCTTTCTCTC
TCTCTTTTTTTTCTCCTTTTCTTCTTCNTTCTCGACCTCTCCCTTCCTTT
TTTCCTTCCTTTCCTTTTTCCGTCTCCCCTTTTCTTTTTTTTTTTACCCT
TTTCTCTCTTTTTTCTTTCCCCTTTTCGTTCATCCTTTCTTTTTCCTTCT
TACCTTTCTACTCCCTTCTTCCTTTTTGTTCCCTCCCTTTATTTTCTCCC
TTTTTTCTTCTTCCCCATCTCTGTCTTCCCTTTTTTCCTCTCCTCCCTTT
TTTTTTTTTTTTTTTTTTTCATTCTTTTTCCTTTTTTTCCCCTTTTTTCT
CCTTTTTCCCCTTTTTTTTTTTCCTTTCTTTGTTCCTTCTCCCTCCCTCT
CTTTTTTTCCATTTTTTTCCCTTTCTCCTCCCTTTTATCCTCTTTTTTTT
CTCCCTTTATCTTTTTTTCCTCCTACTTTTTTTTTCTCTCTTTTTCTCGC
CCCTCTTTTTCCCCTCTTTATATTTTCCATTTTCTTACCCCTGTTTTCTC
CTCGTTTATCCCCCCCTTTTTGTTTTCTTTTACCCCGCTTATTTTTCCTC
TTTCTTGCCCTCCTTCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b22.b1 MSMg01no405_b22.b1 CHROMAT_FILE:
MSMg01no405_b22.b1 PHD_FILE: MSMg01no405_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:01 2005
         (465 letters)



>mm_chr4_94613840_94614704
          Length = 865

 Score =  882 bits (456), Expect = 0.0
 Identities = 462/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   aatctgtgattttggcccttttagcagttacatttacagagacaaattatctctaaagtt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatctgtgattttggcccttttagcagttacatttacagagacaaattatctctaaagtt 261

                                                                       
Query: 62  ttaaaaacaaacaatgcaaacaaccaagcacgtaagcctgtgggtttagggatgaagcac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaaaaacaaacaatgcaaacaaccaagcacgtaagcctgtgggtttagggatgaagcac 321

                                                                       
Query: 122 agggcccagacagtgtgcaaggttcaaatcggagcccatcacaaccaaaggaacaaaacg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agggcccagacagtgtgcaaggttcaaatcggagcccatcacaaccaaaggaacaaaacg 381

                                                                       
Query: 182 agcactcagtacatagcgcatgggcagttttctggggatgcacacattggtctttcaata 241
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 382 agcactcagtacatagcgcatgggcagttttctgggaatgcacacattggtctttcaata 441

                                                                       
Query: 242 gtatatagaaaaaagcagcagaaagaacttgggaagtttaatttttaggattattcccaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtatatagaaaaaagcagcagaaagaacttgggaagtttaatttttaggattattcccaa 501

                                                                       
Query: 302 aagactaaataaactaaaataaaagattaaacacaaaccaaagatgttaacagtctattc 361
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 502 aagactaaataaactaaaataaaagactaaacacaaaccaaagatgttaacagtctattc 561

                                                                       
Query: 362 atcttaatcagaagtagaaaaaaaattctaaacctttagaattttcaagtacaaagttag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcttaatcagaagtagaaaaaaaattctaaacctttagaattttcaagtacaaagttag 621

                                                       
Query: 422 aaatgaccgtttaaattcaaattacatttatactatatttctta 465
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaatgaccgtttaaattcaaattacatttatactatatttctta 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_b22.g1 MSMg01no405_b22.g1 CHROMAT_FILE:
MSMg01no405_b22.g1 PHD_FILE: MSMg01no405_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:01 2005
         (191 letters)



>mm_chr4_94783701_94784291
          Length = 591

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacaacaaacaggacagtgacaaagcagagagaaagtggggacaatggaaggaaatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caacaacaaacaggacagtgacaaagcagagagaaagtggggacaatggaaggaaatggt 329

                                                                       
Query: 61  gaaagattcctgagccagtgtggggttgcaggagtctacttccgggaacacagtccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaagattcctgagccagtgtggggttgcaggagtctacttccgggaacacagtccaggg 269

                                                                       
Query: 121 acaaaggcaactgatgctgagaggtcgacactttgtaagtacatttcagtgtgtgtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaaaggcaactgatgctgagaggtcgacactttgtaagtacatttcagtgtgtgtgggg 209

                   
Query: 181 tggggtgg 188
           ||||||||
Sbjct: 208 tggggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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