Query= MSMg01no405_p04.b1 MSMg01no405_p04.b1 CHROMAT_FILE:
MSMg01no405_p04.b1 PHD_FILE: MSMg01no405_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:05 2005
(433 letters)
>mm_chr4_25315561_25316393
Length = 833
Score = 793 bits (410), Expect = 0.0
Identities = 428/434 (98%), Gaps = 2/434 (0%)
Strand = Plus / Plus
Query: 1 aaatttacatgataatatcgatgacttattttagacagctttagctaatttgctcttcat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaatttacatgataatatcgatgacttattttagacagctttaactaatttgctcttcat 260
Query: 61 ttttttt-ccagcttaatatttcctgacatttgaactagacaatggctgaatacaaatgt 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttccagcttaatatttcctgacatttgaactagacaatggctgaatacaaatgt 320
Query: 120 tttacgtgctctttagtggagatacctactgcaagatgattattaaaaagggtatgaatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tttacgtgctctttagtggagatacctactgcaagatgattattaaaaaggctatgaatc 380
Query: 180 attcctttctctaaaatattcagttccttccactgattgcgattagctcttcatgttatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcctttctctaaaatattcagttccttccactgattgcgattagctcttcatgttatt 440
Query: 240 ttaattagaggataacatggctgctaaaaaaatcagactaagtgtctataaataaaagta 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattagaggaaaacatggctgctaaaaaaatcagactaagtgtctataaataaaagta 500
Query: 300 tccatcttgcagagttaaattttaattaacctttagcatcccaacctttccagtagaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatcttgcagagttaaattttaattaacctttagcatcccaacctttccagtagaatt 560
Query: 360 tgtcaggatttgtgaccatttatttcatgcaaaagcaacacagactgtttttatgtacat 419
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 561 tgtcaggatttgtgaccatttatttcatgcaaaagcaacaccgactgttttt-tgtacat 619
Query: 420 ataatctaaatctg 433
||||||||||||||
Sbjct: 620 ataatctaaatctg 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_p04.g1 MSMg01no405_p04.g1 CHROMAT_FILE:
MSMg01no405_p04.g1 PHD_FILE: MSMg01no405_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:05 2005
(543 letters)
>mm_chr4_25541735_25542677
Length = 943
Score = 884 bits (457), Expect = 0.0
Identities = 481/491 (97%), Gaps = 5/491 (1%)
Strand = Plus / Minus
Query: 1 agtggaagcatgttgagttccttcatcaacaggaatatagagtttgagtgtatttgattg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 487 agtggaagcatgtcgagttccttcatcaacaggaatatagagtttgagtgtatatgattg 428
Query: 61 actatatttagaaaacttattcttttgactcaaggctaatttatttccattcatttaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actatatttagaaaacttattcttttgactcaaggctaatttatttccattcatttaaca 368
Query: 121 tactttgggtatattttcatttaaaagtaaattccataccactactgttttaaagcatta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cactttgggtatattttcatttaaaagtaaattccataccactactgttttaaagcatta 308
Query: 181 ctcaaggcactgttcctaagccatgtaatctagagtttgcagagataattattaataata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctcaaggcactgttcctaagccatgtaatctagagtttgcagagataattattaataata 248
Query: 241 ctgacacctggtccattttccatgtaattggaacatttttatttaagaaaacaaaacaaa 300
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 ctgacagctggtccattttccatgtaattggaacatttttatttaaggaaacaaaacaaa 188
Query: 301 accacaaaaaa-caaacaaacaagaaaagcaaaaacaaacaaacaaaaaacaaaacaaaa 359
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 187 accacaaaaaaacaaacaaacaagaaaagcaaaaacaaacaaacaaaaaa----acaaaa 132
Query: 360 caaaacgataaaggaagaagacagaaaccatggcattactacaaagtaatcctatgcctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 caaaacgataaaggaagaagacagaaaccatggcattactacaaagtaatcctatgcctc 72
Query: 420 ccagaggttctctgactcacatctgctttgagaaattcctacatcaatggcataagaatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ccagaggttctctgactcacatctgctttgagaaattcctacatcaatggcataagaatt 12
Query: 480 atttacatcat 490
|||||||||||
Sbjct: 11 atttacatcat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
