CCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCTTTTCCCTGTTCAGACAAGGGGGGGAAATTCACATAAATA
AAACAACACATTAGTTAAGTTCATTGCTTTAACCCAGCAGATATAGCTGT
AAGCTCTTTAAAAGGTCTTTGCGAATGTCAAGAAACAAAAATTGGCGGGC
TGGGCTGCTTGGACTTGATACATTCTCTTTCAAGTGCAGCCTTTGTTTCT
TCTCTGACAGATTCTTGAGCATGTTAATCACATGATTCTCTTCCCAGTGT
GCTGCTCTTCCTGCAAGTCACTGTCACAGTCTGCAAAGAGTAAGGTTCTT
TGCTTTTAGGCTGCCTCCAAATCACAAAGGGCTCGATGAGGAAACAGACC
TCTGCTGGCTTTTGGCCCAAGTGTCACCTAAATGTCTACCTATCTCAGAA
CCACCCTGGTGGCTTTGTAGGCAGCTTGAATATCTTGCCCCTGTCCTCAC
AGTTTCTGACTCATGAGGCCTGACGGAAGTGCCAATAATCTACATTTTTC
TTTTTTTATTCTGGCTCATTTGTGTTTACTGCAGCATTTTTCTTTTGTTT
TAAAAATGAATTTTAATTTATAAATTATTCCCTTCCTGTAAATGGGTCAT
AATAAACACGTTTTTTCCCCGATAAAAAATAATTTTGTACAGGGCGNAAA
ATAACCTATCGTTGGGAAAAACTCCCCTTAATTCTTGGGGCCCAAAACAG
GTCGAATAAAATCCTTCCCTCTTAAAATAAATTG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTATAANACTACCTCCACATTGGC
ATATTGTATTCTTCACGGAAGTGGTAAAATACTAATTCAAATTCAGCAAT
AAAAGAGATATTTTAAAAGTTTGCTTTTCGTTCAAAAATGAGGGAAGGTT
AATTGAGTCATTAAACTCCTCGGTAAGGACTCTGAGACAGAAGTCACTGG
GATCAGAGCAGGAGAGAAAGGATTCAGAAAGGAATAAATGTGACGGGCAC
CCTACGAAGTACGAATGGAGCAGAACAGAAACAGGTAACCTCACCCCTAA
GTCACACAGCAGGGAATGAGCCAGGCAGACTCTCACTAACAACATAAATA
ATATGGTTAAATATAAGTAGATGCTTTAAAAGGCAAAAATGAATCTATAT
TGTATTGGAATGTACACACAGGTGGTAAAATGATAAAGAAACTCTAGAGA
CTGGATTATTCAAAACGCTGTGATTTTGAACTCTCTCTGGGGGAAGGAGA
AGCTTGTGACAAATCAGAAAGCAGCGTGCTAGGGCCAACCATCAGACCTG
AGTGAATTAAAACACAATCTAGTCATGTAAAAAAAATGTTTGCTTTTGGG
CCTAAAATATTTTTGGAATATGGCCTTGGACTTTCGTCCGACTCTCCCCC
ATTTACTATCTTTACTTCCTCCCAAAATTTTTTTACACCGCCTTTTATCT
CCCTTAATGTTTTTTTCTCTCCGGGC

Query= MSMg01no405_p17.b1 MSMg01no405_p17.b1 CHROMAT_FILE:
MSMg01no405_p17.b1 PHD_FILE: MSMg01no405_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:08 2005
         (442 letters)



>mm_chr4_31846809_31847650
          Length = 842

 Score =  824 bits (426), Expect = 0.0
 Identities = 438/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagggggggaaattcacataaataaaacaacacattagttaagttcattgctttaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 acaagggggggaaattcacataaataaaacaacacattagttaagttcattgctttaacc 583

                                                                       
Query: 61  cagcagatatagctgtaagctctttaaaaggtctttgcgaatgtcaagaaacaaaaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagcagatatagctgtaagctctttaaaaggtctttgcgaatgtcaagaaacaaaaattg 523

                                                                       
Query: 121 gcgggctgggctgcttggacttgatacattctctttcaagtgcagcctttgtttcttctc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gccggctgggctgcttggacttgatacattctctttcaagtgcagcctttgtttcttctc 463

                                                                       
Query: 181 tgacagattcttgagcatgttaatcacatgattctcttcccagtgtgctgctcttcctgc 240
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 462 tgacacattcttgagcatgttaatcacatgattctcttcccagcgtgctgctcttcctgc 403

                                                                       
Query: 241 aagtcactgtcacagtctgcaaagagtaaggttctttgcttttaggctgcctccaaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagtcactgtcacagtctgcaaagagtaaggttctttgcttttaggctgcctccaaatca 343

                                                                       
Query: 301 caaagggctcgatgaggaaacagacctctgctggcttttggcccaagtgtcacctaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaagggctcgatgaggaaacagacctctgctggcttttggcccaagtgtcacctaaatg 283

                                                                       
Query: 361 tctacctatctcagaaccaccctggtggctttgtaggcagcttgaatatcttgcccctgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 282 tctacctatctcagaaccaccctggtggctttgtaggcagcttgaatatcttgccccttt 223

                                 
Query: 421 cctcacagtttctgactcatga 442
           ||||||||||||||||||||||
Sbjct: 222 cctcacagtttctgactcatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_p17.g1 MSMg01no405_p17.g1 CHROMAT_FILE:
MSMg01no405_p17.g1 PHD_FILE: MSMg01no405_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:08 2005
         (446 letters)



>mm_chr4_31667395_31668240
          Length = 846

 Score =  818 bits (423), Expect = 0.0
 Identities = 440/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctataanactacctccacattggcatattgtattcttcacggaagtggtaaaatacta 60
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctataaaactacatccacattggcatattgtattcttcacggaagtggtaaaatacta 260

                                                                       
Query: 61  attcaaattcagcaataaaagagatattttaaaagtttgcttttcgttcaaaaatgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaaattcagcaataaaagagatattttaaaagtttgcttttcgttcaaaaatgaggg 320

                                                                       
Query: 121 aaggttaattgagtcattaaactcctcggtaaggactctgagacagaagtcactgggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggttaattgagtcattaaactcctcggtaaggactctgagacagaagtcactgggatc 380

                                                                       
Query: 181 agagcaggagagaaaggattcagaaaggaataaatgtgacgggcaccctacgaagtacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagcaggagagaaaggattcagaaaggaataaatgtgacgggcaccctacgaagtacga 440

                                                                       
Query: 241 atggagcagaacagaaacaggtaacctcacccctaagtcacacagcagggaatgagccag 300
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 441 atggagcagaacagaaacaggttacctcaccgctaagtcacacagcagggaatgagccag 500

                                                                       
Query: 301 gcagactctcactaacaacataaataatatggttaaatataagtagatgctttaaaaggc 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gcagactctcactaacaacataaataatatggttagatataagtagatgctttaaaaggc 560

                                                                       
Query: 361 aaaaatgaatctatattgtattggaatgtacacacaggtggtaaaatgataaagaaactc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aaaaatgaatctatattgtattggaatgtacacacaggcggtaaaatgataaagaaactc 620

                                     
Query: 421 tagagactggattattcaaaacgctg 446
           ||||||||||||||||||||||||||
Sbjct: 621 tagagactggattattcaaaacgctg 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)