BAC Information

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BAC

Clone NameMSMg01-405P22
Chromosome4 (Build37)
Map Location 136,305,169 - 136,497,220
singlet/doubletdoublet
Overlap geneEphb2, C1qb, C1qc, C1qa, Epha8
Upstream geneIl22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684
Downstream geneZbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P22.T7 (MSMg01no405_p22.b1)MSMg01-405P22.TJ (MSMg01no405_p22.g1)
ACCAG504294AG504295
length792807
length of high quality
(start - end)
317 (75 - 391)410 (77 - 486)
definitionCHROMAT_FILE: MSMg01no405_p22.b1 PHD_FILE: MSMg01no405_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:09 2005CHROMAT_FILE: MSMg01no405_p22.g1 PHD_FILE: MSMg01no405_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,496,907 - 136,497,220)(136,305,169 - 136,305,578)
sequence
NAACTTGTCCTCATGTCACTATACGACTCACTATTTTCCGAGGATCCGCG
GAATTCATCACAGGTATCGGCAAGAAAAGGCACCCTGAGAAGAAAGCCCA
GCATGTGTAAAGGCCCTGGGGCCTGTAGCGTGAGAACAGCCGGAGCCCAG
TCTGGCCTGAGGATGGGAGGCTGAGGTAGAGGGTCAGCAGGGATTCCTGA
GCCTATCTGACTTGATCTTACCCTTCAGATATCCACCCTCCATCCTTGGG
GAGGGGGCTTCTGCCACTGCTCTCCAGGACCCTTTTGCCCTCCTGAGTAT
AATTTGATCGTGTTTGCCGGCATCTCCTTCCCTAACATGGTGTAAGGCGG
ACTGGGCAGTTCAATTAATGAATGTCCCCCGGCTCTGATAAGGGCCTGGT
CCTGGGTCCTGCTCCTAAGTGATCTAGCTATCAACTGACTGAGGAGTGTA
GTGGCCAGGAGGTCCCTGTTGTTAATTACCCTGTTCACTCAGATTAGGTG
CCGCTCCTAACTTATTTTTTGTCGTTTTTCTCTGCTCAGTTCAACTTTCA
CTATTTGTTGCTCTCTGTAATTCTTTTCACTCCTCCCTCACTTTCTGCCC
CCTTTCGCTCTCTTCTTTTTCCCTCTCTTCATTCTCTTTTTTTTCTATTT
TCCCTCTTCTTTCTCTTTTTCTCTCCTTTCCCTCTTTTATTCCATCTTCC
CCTTTTTTCCTTACTTTTTTCTACTTCACTCCACTTCCTCTCTTTCTCTC
TTTTCTCTCTTTTCTCTTCCTTTTCTCTCTCGTTCTATTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAACTCAATGCCTAACACTTCCT
TCTCCCGCTACAGAAGGAGGGGTTGGGGTGTGGCTCAGTTGCTATAGTGC
TTGCCCAGCAAGTAGGAAGGAGGCCCTGGGTCCACACCCAAGCACCACAT
AAAACCAGGAGTGGGGTCTCATATCTGGGATCAGAACTGGGGATGCAAAG
GCAGGAGAATGAGGAGTTTGAGGACCTTGAACTTGAGGCCAGCCTGGGAC
ACATAGAACCCTGTCTCAAATTGAGGTTTGCCTGGGCTATAATGAGACCC
TGTTTCAGAAGAAAAAAAAATCCATGTCTTCCATTTCATCCCTTCCTAAA
GCAGTATTTGGGTCACTTGTGTTTCTTCATTGCCCAGCTAGGACACAGGG
TCCTGGAGGATGAAACAGGGGTGTCCCAATGTCATCAAGCAGGTTGCAGA
GAGAGAAAGGTGGTGTCCCTTGAAGGTAATCCGTTGTAGCCGAAATTATT
GTCTGCTCTTCAATAAAGTGTTGTGTGGCGTCTATCACTCCAGCATCCTC
CTTTTCCCCAATATAACGTAACCCTTGTTTCCCCCTTTGTTCTCCTCAAA
TACTTTCCCTGTATTCATCTTTCCATTTTTTCCCCCGCCCTTTCTCGCCG
TATCTTTTGTTTCTTTATTATACCGTGTTGTTTCCGTTTTTTCCGCGCCC
CTTTTTTTATTCTCTTACACCCTGTTTTTTTCCTCTCTTTCTCCCTCCTT
TTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p22.b1 MSMg01no405_p22.b1 CHROMAT_FILE:
MSMg01no405_p22.b1 PHD_FILE: MSMg01no405_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:09 2005
         (317 letters)



>mm_chr4_136496707_136497423
          Length = 717

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggcaccctgagaagaaagcccagcatgtgtaaaggccctggggcctgtagcgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaaggcaccctgagaagaaagcccagcatgtgtaaaggccctggggcctgtagcgtgag 455

                                                                       
Query: 61  aacagccggagcccagtctggcctgaggatgggaggctgaggtagagggtcagcagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacagccggagcccagtctggcctgaggatgggaggctgaggtagagggtcagcagggat 395

                                                                       
Query: 121 tcctgagcctatctgacttgatcttacccttcagatatccaccctccatccttggggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcctgagcctatctgacttgatcttacccttcagatatccaccctccatccttggggagg 335

                                                                       
Query: 181 gggcttctgccactgctctccaggacccttttgccctcctgagtataatttgatcgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gggcttctgccactgctctccaggacccttttgccctcctgagtataatttgatcgtgtt 275

                                                                       
Query: 241 tgccggcatctccttccctaacatggtgtaaggcggactgggcagttcaattaatgaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgccggcatctccttccctaacatggtgtaaggcggactgggcagttcaattaatgaatg 215

                         
Query: 301 tcccccggctctga 314
           ||||||||||||||
Sbjct: 214 tcccccggctctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no405_p22.g1 MSMg01no405_p22.g1 CHROMAT_FILE:
MSMg01no405_p22.g1 PHD_FILE: MSMg01no405_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:09 2005
         (410 letters)



>mm_chr4_136304969_136305778
          Length = 810

 Score =  770 bits (398), Expect = 0.0
 Identities = 407/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaactcaatgcctaacacttccttctcccgctacagaaggaggggttggggtgtggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaactcaatgcctaacacttccttctcccgctacagaaggaggggttggggtgtggctc 260

                                                                       
Query: 61  agttgctatagtgcttgcccagcaagtaggaaggaggccctgggtccacacccaagcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgctatagtgcttgcccagcaagtaggaaggaggccctgggtccacacccaagcacc 320

                                                                       
Query: 121 acataaaaccaggagtggggtctcatatctgggatcagaactggggatgcaaaggcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaaaccaggagtggggtctcatatctgggatcagaactggggatgcaaaggcagga 380

                                                                       
Query: 181 gaatgaggagtttgaggaccttgaacttgaggccagcctgggacacatagaaccctgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgaggagtttgaggaccttgaacttgaggccagcctgggacacatagaaccctgtct 440

                                                                       
Query: 241 caaattgaggtttgcctgggctataatgagaccctgtttcagaagaaaaaaaaatccatg 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaattgaggccagcctgggctataatgagaccctgtttcagaagaaaaaaaaatccatg 500

                                                                       
Query: 301 tcttccatttcatcccttcctaaagcagtatttgggtcacttgtgtttcttcattgccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttccatttcatcccttcctaaagcagtatttgggtcacttgtgtttcttcattgccca 560

                                                             
Query: 361 gctaggacacagggtcctggaggatgaaacaggggtgtcccaatgtcatc 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctaggacacagggtcctggaggatgaaacaggggtgtcccaatgtcatc 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)