BAC Information

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BAC

Clone NameMSMg01-406M06
Chromosome4 (Build37)
Map Location 63,753,589 - 63,753,837
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406M06.T7 (MSMg01no406_m06.b1)MSMg01-406M06.TJ (MSMg01no406_m06.g1)
ACCAG504883AG504884
length769773
length of high quality
(start - end)
233 (73 - 305)242 (67 - 308)
definitionCHROMAT_FILE: MSMg01no406_m06.b1 PHD_FILE: MSMg01no406_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:11 2005CHROMAT_FILE: MSMg01no406_m06.g1 PHD_FILE: MSMg01no406_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TCACCTCCGGTCCCCTCTATGACTCTAGGTACCCTTATGGTTCATCATTA
TTCTCTCATGGATGATATACCTTTGTATTCTCAGTTATCTTTCCCTGGGC
CTTTCTCCACTGTTCCCAGTGTACTATGAATCATTGTTCAATATTTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCC
TCTGTCAGTCTTTAGCTTTAATTAATTGACCAGATAAATTTATCAGAAAT
GGGGCTTTAGACTTTTTTTTTTTTTGGAGACTGTTTTTAGAAGCTGTTTC
CAGGACAGGTAGGTGTTGGTAGAGTACAACAGGAGGTGGAAGGAACTGTC
TGATCATACTGTCTATACCCTAGTGGTGGCCACCGATCCTGATTGCATCG
AGTAGCTTTATGAGTATTATTTATGTGTTACTTGGTTAGAACACTCCTCA
TGGCGGATAACTTGTTCTTCTTGAAAATTTTGTCCCTATTTTGTCCTGTA
CCCTTTTATTTATCTTCTGATTTCCTTCTTACTTCTCCCTTCTCCGTTTT
TTTTTTGTATCGTTTTTATCCCTTCTATTTTATCTCTTTCTTCCTACCTC
TTTACTTTTTTTTTCGGCATTTCCACCTCTTGTAATGTTACATCCTATTT
CTTATCCCCCCTTTTTTTACCCTTTTTTTTCTCTTTTCTTTCTGTACTCT
ATATCTTTTCCCTTTTTTN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACATACCCTAAAAGGGGGAAACAAAACACTCATAGGAGGCA
GAGGGATATAGGGACACTGAGTGAGAAAGAAGACAGGGAAGGAAATGGAG
GCTTAGGATCAGGTGTGAGGAGAGACAGGAGGCCCAGAGGGCCAGGAAAA
TGAATAGAAATCTGCATCTGCAGGGGATAGAAAGAGGAGAATCTCTTATG
AATTCCCAGAGACCTGAGATAGGGGAGGCTCCTAGGAATTAATGTGGGTG
ACCTTAGCCTTTTTTCTTATCAGNGGGGACATGGAACCAGAAGAGGCCAG
GCAGGTTACCAAGCGGAGATCCCACTCACAAAACTTTCTACCCTACACCC
ATCATGCCTAAGCGCTTTGTTATGTCTTTGATCGCGCCGAGACTGATAGA
CTAGTCTACCAATATCTGCTCCTACTTGAGGTCCATCCCATATGCTAGTT
ATTCTCCTTGATCCTTTTATTGTAACTTCTTTATGTTTATACACTACAGC
TTATTATTTCTGTTCTCTGATAGCTTCTATCTTTCTTTTTGTTTGTATCT
TATTATTATTTTCTTCGTCCCTTTTTTGTTTTTGTTTTCCCCCCCTCCCC
CTCTTTTTTTATCTCTTTTCCCCCCCTTTTCCTTCTTCCCCCCCCTTACA
CCGTTATCCATTTTCGTTTTTTCCCCCCCCCCCCCCCTCCCCTTTTCCTT
CTTTTTCCCCCTCCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_m06.b1 MSMg01no406_m06.b1 CHROMAT_FILE:
MSMg01no406_m06.b1 PHD_FILE: MSMg01no406_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:11 2005
         (233 letters)



>mm_chr4_63753389_63754021
          Length = 633

 Score =  377 bits (195), Expect = e-109
 Identities = 229/249 (91%), Gaps = 16/249 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaggtacccttatggttcatcattattctctcatggatgatatacctttgtattctc 60
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 201 ctctaggtacccttatggttcatcattattctctcatggatgagaaacctttgtattctc 260

                                                                       
Query: 61  agttatctttccctgggcctttctccactgttcccagtgtactatgaatcattgttcaat 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtctttccctgggcctttctccactgttcccagtgtactatgaatcattgttcaat 320

                                                                       
Query: 121 atttctctctctctctctctctctctctctctctctctc--------cctc------tct 166
           |||||||||||||||||||||||||||||||||||||||        ||||      |||
Sbjct: 321 atttctctctctctctctctctctctctctctctctctctctctctccctccctccctct 380

                                                                       
Query: 167 ctctctc--cctcctctgtcagtctttagctttaattaattgaccagataaatttatcag 224
           |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ctctctctacctcctctgtcagtctttagctttaattaatttaccagataaatttatcag 440

                    
Query: 225 aaatggggc 233
           |||||||||
Sbjct: 441 aaatggggc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)