BAC Information

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BAC

Clone NameMSMg01-406M17
Chromosome4 (Build37)
Map Location 128,270,011 - 128,445,113
singlet/doubletdoublet
Overlap geneTlr12, Phc2, A3galt2
Upstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20
Downstream geneBC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406M17.T7 (MSMg01no406_m17.b1)MSMg01-406M17.TJ (MSMg01no406_m17.g1)
ACCAG504905AG504906
length855752
length of high quality
(start - end)		139 (74 - 212)424 (80 - 503)
definitionCHROMAT_FILE: MSMg01no406_m17.b1 PHD_FILE: MSMg01no406_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:14 2005CHROMAT_FILE: MSMg01no406_m17.g1 PHD_FILE: MSMg01no406_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,270,011 - 128,270,149)(128,444,690 - 128,445,113)
sequence
NNTTATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGAGACATCCG
CGGAATTCTGGGATGTCCACAAGTATCTAAAGCAGGTGAACACTATTCAA
AATGCTCTTGCTTCACAGAAGTAAATTACATAAAATGTTGTGACCTTAAA
AATAACTGATAAGCATATTTATAAGCCTGCTTGCCTCTGAAGTAGTTACA
ATCAACAAAGAAGCTGCATGGATAAACCTCTAAGACAATCCTCACTCTAG
CCTGCTCCTCCAGCTGAACCACGCTACACGAAAAATTCACCCCTTGGGCA
GAACTTCTGCCCCGACGGATTTTTTTTTTTTTCCCGACGGACGAGGAGAA
GAACCGAGAACACCCCTGAAGTCCCTCCCTCCCCATGTTCTTAACCCCGG
AAAGAAGTTTTAAAATTATTTCTCCCCCCTCTCACGAGAAAAAAATTTTG
TTTGTGAAAACCCTCCCTTCCAAAAAAAAAACTCTCAAGGTTTTTTAAAA
ACCTCAAACAAAAAAGGAGCCCCCCTCTAGCCTCCCCCTTTNTTTCTGCC
CCCAATTGGAAAAAAAAAAAGTGAATTCCTTGACCGGAAACCTTTAAAGA
ACCGTTGTTTGTTTAATCACCTCCTTCCCCGTTCTACTTTTCTCTTTTTT
CCATCCTCTATCTCTTTCTTCTAAAATCCTATTTTCTCTCCTCTTTCTCT
TAAAAAGCCCTTCAAATAATCTCCATATTATATATTTTATTGTACTCTCA
GTTTTCTATGTCTTTTTCCTTTTGTACTTGTCTTTCTCATATACTTTCAC
CATTTCTAAAATACGTTTCTTTCTCCCTCTTACCATTATATATATTTCCC
TCCTC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTTTCCATAATTTGCTT
CTGGTTGGAGCAAAAAGGCTCTCCAGTCAGCTGACAAAGGATCTACAGGC
CCCAGGTACAGGATCTCTTTTCAATATCTCTGAGTTCCAAAGTCCCCCTT
CCCAGAGGCGCTATAAGTGGCTCTGACTTAAGGTAGTGCCAAAGATGTTG
GCGCCTGCTTGGCCAGGGAAGGGCTGCTAGTTTCGCACCAGCGTATATTC
CTTGGGTGCCCAGAGCAGGCGTGGGTGATGGATCTCTCTCCTCCAGATAA
TTTCCTCTGCCCAGCAGAACTCAGGCGACAGCAGCTTGGTGGGCTTGTTC
AGCCAGAAGAACTTGTTAAGGTGGCTTTCGTCGTGCCAGAGTGCCTCAAT
GCCGCGCTTATGGTCCAGCTGTTGGCCAGTCGCACAGTGGGCCGTCAGCT
TGAGCAGTGCAGCCACACTGCCGCCAAACACCGCAGCGTGGTAGGAGAAA
TCGCCTTCGCTTAACGACAGCGCAACACCCGATTGCTTGGCCCTCTCGTA
AGGCAGAAGTCACCCGCGGCCTATGGAAATGCCATGAGTGGCGTCTGTTT
CCCCCAATTTGGCAGCACCTCAAGCCCCAAATTTTACTGGTGACATTATT
GTCTCTAGCTCACGGTAAAACTAATCATTCTTTTTTTTTTTACCTGCTTG
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_m17.b1 MSMg01no406_m17.b1 CHROMAT_FILE:
MSMg01no406_m17.b1 PHD_FILE: MSMg01no406_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:14 2005
         (139 letters)



>mm_chr4_128269811_128270349
          Length = 539

 Score =  269 bits (139), Expect = 5e-77
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctaaagcaggtgaacactattcaaaatgctcttgcttcacagaagtaaattacataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctaaagcaggtgaacactattcaaaatgctcttgcttcacagaagtaaattacataa 260

                                                                       
Query: 61  aatgttgtgaccttaaaaataactgataagcatatttataagcctgcttgcctctgaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgttgtgaccttaaaaataactgataagcatatttataagcctgcttgcctctgaagt 320

                              
Query: 121 agttacaatcaacaaagaa 139
           |||||||||||||||||||
Sbjct: 321 agttacaatcaacaaagaa 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no406_m17.g1 MSMg01no406_m17.g1 CHROMAT_FILE:
MSMg01no406_m17.g1 PHD_FILE: MSMg01no406_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:14 2005
         (424 letters)



>mm_chr4_128444490_128445313
          Length = 824

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcctttccataatttgcttctggttggagcaaaaaggctctccagtcagctgacaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 ttgcctttccataatttgcttctggttggagcaaaaaggctctcctgtcagctgacaaag 565

                                                                       
Query: 61  gatctacaggccccaggtacaggatctcttttcaatatctctgagttccaaagtccccct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtctacaggccccaggtacaggatctcttttcaatatctctgagttccaaagtccccct 505

                                                                       
Query: 121 tcccagaggcgctataagtggctctgacttaaggtagtgccaaagatgttggcgcctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccagaggcgctataagtggctctgacttaaggtagtgccaaagatgttggcgcctgct 445

                                                                       
Query: 181 tggccagggaagggctgctagtttcgcaccagcgtatattccttgggtgcccagagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggccagggaagggctgctagtttcgcaccagcgtatattccttgggtgcccagagcagg 385

                                                                       
Query: 241 cgtgggtgatggatctctctcctccagataatttcctctgcccagcagaactcaggcgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgtgggtgatggatctctctcctccagataatttcctctgcccagcagaactcaggcgac 325

                                                                       
Query: 301 agcagcttggtgggcttgttcagccagaagaacttgttaaggtggctttcgtcgtgccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcagcttggtgggcttgttcagccagaagaacttgttaaggtggctttcgtcgtgccag 265

                                                                       
Query: 361 agtgcctcaatgccgcgcttatggtccagctgttggccagtcgcacagtgggccgtcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgcctcaatgccgcgcttatggtccagctgttggccagtcgcacagtgggccgtcagc 205

               
Query: 421 ttga 424
           ||||
Sbjct: 204 ttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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