Query= MSMg01no407_b15.b1 MSMg01no407_b15.b1 CHROMAT_FILE:
MSMg01no407_b15.b1 PHD_FILE: MSMg01no407_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:39 2005
(633 letters)
>mm_chr4_82402510_82403541
Length = 1032
Score = 1081 bits (559), Expect = 0.0
Identities = 612/636 (96%), Gaps = 15/636 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtcttctctac-tgaccatgagcttcacaggggcatgactcccgtgacttgag 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattctgtcttctttacatgaccatgagcttcacaggggcatgactcccgtgacttgag 773
Query: 64 tggatgtgtgactctgtcgcgtgatgtgacaacacaatgggacaagaacattcctccctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tggatgtgtgactctgtcgcgtgatgtgacaacacaatgggacaagaacattcctccctt 713
Query: 124 ggtggaacaggacaagaggcctcacacccccaaagttatacacaaacccatttccctggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggtggaacaggacaagaggcctcacacccccaaagttatacacaaacccatttccctggt 653
Query: 184 gttgctgagactgcagtagaactcaagggctctgggccccaaaccagatgagctatctac 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 652 gttgctgagactgcagtagaacccaagggctctgggccccaaaccagatgagctatctac 593
Query: 244 accgtacactcaggccggtcctgagagaggtgggctgctgcgtcttccacacatgtattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 accgtacactcaggccggtcctgagagaggtgggctgctgcgtcttccacacatgtattt 533
Query: 304 ccagaactccacaggtggtggtaacaggccattgtgagggcttcttcattctcatatgtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ccagaactccacaggtggtggtaacaggccattgtgagggcttcttcattctcatatgtt 473
Query: 364 ctccatgaattgttcaatactcaggaaggtgaagagcttttgggacattcttgcaagatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctccatgaattgttcaatactcaggaaggtgaagagcttttgggacattcttgcaagatg 413
Query: 424 gagtcttaacttccttctgctgtattttccttggacaggtta----gtcctctgtgccag 479
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 412 gagtcttaacttccttctgctgtattttcctt-----ggttaagatgtcctctgtgccag 358
Query: 480 aagctctgtgagccagaccttagggccttcgagccttgggggagcacgggggacccaata 539
||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 357 cagctccgtgagccagaccttaggggcttcgagccttgggggggcacgggggacccaata 298
Query: 540 ggctgacaggaagcaggagctgcgggcctgaaga-cagccacacatccagctatgaggat 598
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 297 ggctgacaggaagcaggagctgcgggcctgaagaccagccacacatccagctgtgaggat 238
Query: 599 tgagc-atcctcagncttaggctttcctttcacctc 633
| | ||||||| |||||||||||||||||||||
Sbjct: 237 t---ctctcctcagccttaggctttcctttcacctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1032
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1022
Effective search space: 636706
Effective search space used: 636706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_b15.g1 MSMg01no407_b15.g1 CHROMAT_FILE:
MSMg01no407_b15.g1 PHD_FILE: MSMg01no407_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:39 2005
(501 letters)
>mm_chr4_82201247_82202147
Length = 901
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Plus
Query: 1 actctacagacatacattcttatcagtcctttgcttacgaaagcttgtctttgtgtaggg 60
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 201 actctacagacatacattcttatcactcctttgcttacaaaagcttgtctttgtgtaggg 260
Query: 61 gaagttttcaagtcttactaatgaatcacagacacaaggcaggagggagagagcgtctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagttttcaagtcttactaatgaatcacagacacaaggcaggagggagagagcgtctag 320
Query: 121 cattttcctttctgactggtctaatacgagaccagaaagctattgagtgaagtaaaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattttcctttctgactggtctaatacgagaccagaaagctattgagtgaagtaaaacct 380
Query: 181 cccagactttatcctttctacccaggaactctttctgtgccagtccttgcagcagcctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagactttatcctttctacccaggaactctttctgtgccagtccttgcagcagcctga 440
Query: 241 gagtcagacatggttttaggcagggacttttctgcgtcagggacactcagagtctgtggt 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagccagacatggttttaggcagggacttttctgcgtcagggacactcagagtctgtggt 500
Query: 301 cgacttaggaacaagtagacataaaaactgtagaattaagggatgaaaacatcatttaat 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgacttaggaacaagtagacatagaaactgtagaattaagggatgaaaacatcatttaat 560
Query: 361 gaaaccccgccctccagacgctcttgatcaaagtctgtgcttgcactaagacaatcgatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaccccgccctccagacgctcttgatcaaagtctgtgcttgcactaagacaatcgatc 620
Query: 421 tacagttgcatacataaaattttggcaacactctgtcctcggtgctttcaacagcggctt 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tacagttgcatacataaaattttggcaacactctgtcctcagtgctttcaacagcggctt 680
Query: 481 tagcccccgagtctgggcatc 501
|||||||||||||||||||||
Sbjct: 681 tagcccccgagtctgggcatc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
