Query= MSMg01no407_g21.b1 MSMg01no407_g21.b1 CHROMAT_FILE:
MSMg01no407_g21.b1 PHD_FILE: MSMg01no407_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:04 2005
(582 letters)
>mm_chr4_154133292_154134273
Length = 982
Score = 998 bits (516), Expect = 0.0
Identities = 549/560 (98%), Gaps = 2/560 (0%)
Strand = Plus / Minus
Query: 5 gaattctcctgcatacttcatgtggcctacactctgaggggcttaggatgctgatggcaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattctcctgcatatttcatgtggcctacactctgaggggcttaggatgctgatggcaa 500
Query: 65 agcagcagaagactgaggttcaagctttttaaactcctgtcagcacttctggactcagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcagcagaagactgaggttcaagctttttaaactcctgtcagcacttctggactcagct 440
Query: 125 ggcagtagggtgtggaacatagaatgactcctcctggttccagattcttttcctctggga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcagtagggtgtggaacatagaatgactcctcctggttccagattcttttcctctggga 380
Query: 185 ccatacagtgatgagcccagataagatcttgatacctggggacccttaggtaccattcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 379 ccatacagtgatgagcccagataagatcttgatacctggggacccttaggtaccattgct 320
Query: 245 gatcagttacaccac-gcttgaaggaaagatagaggtttattgtggcagagctgggtcct 303
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatcagttacgcc-ctgcttgaaggaaagatagaggtttattgtggcagagctgggtcct 261
Query: 304 caagtcttagtttcagaacctcactcagaacacggctatctttggacacagggccttgaa 363
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caagtctgagttttagaacctcactcagaacacggctatctttggacacagggccttgaa 201
Query: 364 gttatttgggaaccctgatccagtgtgacacatccttataaggagtctgagaagcagaca 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gttttttgggaaccctgatccagtgtgacacatccttataaggagtctgagaagcagaca 141
Query: 424 cgacacagaaagtgtgaccctgggaggtcacaggaagaagccaccattcatatactgcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cgacacagaaagtgtgaccctgggaggtcacaggaagaagccaccattcatatactgcat 81
Query: 484 gtggaggagaagcctctggaagaaccagttcacccccaaactgaccccaagcttccagtg 543
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 80 gtggaggagaggcctctggaagaaccagttcactctcaaactgaccccaagcttccagtg 21
Query: 544 ctagacattaggcatgagct 563
||||||||||||||||||||
Sbjct: 20 ctagacattaggcatgagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_g21.g1 MSMg01no407_g21.g1 CHROMAT_FILE:
MSMg01no407_g21.g1 PHD_FILE: MSMg01no407_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:04 2005
(438 letters)
>mm_chr4_153937946_153938783
Length = 838
Score = 832 bits (430), Expect = 0.0
Identities = 436/438 (99%)
Strand = Plus / Plus
Query: 1 catgtgaagttaataactatccataggtgtgaataggatgcaatataagcagggcaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgaagttaataactatccataggtgtgaataggatgcaatataagcagggcaaggt 260
Query: 61 gcgtgggagacggggaaaccctaaaacgcacagggagtaaagcgcttgccacttagaaac 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgggagacggggaaaccctaaaacgcacagggagtaaagcgcttgccacttagaaac 320
Query: 121 ccgacacaccccaggggagctcacgggagatcagctcacgggaatgcagaaagctgcgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgacacaccccaggggagctcacgggagatcagctcacgggaatgcagaaagctgcgtc 380
Query: 181 ctgtccactcttagcacagctcagcagtctcgagaacatgtcttctaaggtgatgctcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtccactcttagcacagctcagcagtctcgagaacatgtcttctaaggtgatgctcac 440
Query: 241 accttgatgatttgtgtgacccaggggcctgtctggggaccttcaggactgtagctgacc 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 accttgatgatttgtgtgacccaggggcctgtctggggaccttcagaactgtagctgacc 500
Query: 301 cctaggtgacagagctgttcacgtgctggggcgatagggagccaggactcactcagacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctaggtgacagagctgttcacgtgctggggcgatagggagccaggactcactcagacaa 560
Query: 361 attagataattaaatggaacccaactagataaattgcactttgcaaatgagattatcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attagataattaaatggaacccaactagataaattgcactttgcaaatgagattatcaag 620
Query: 421 aacctttgtgggcagcaa 438
||||||||||||||||||
Sbjct: 621 aacctttgtgggcagcaa 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
