Query= MSMg01no407_h05.b1 MSMg01no407_h05.b1 CHROMAT_FILE:
MSMg01no407_h05.b1 PHD_FILE: MSMg01no407_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:06 2005
(557 letters)
>mm_chr4_141003534_141004490
Length = 957
Score = 1027 bits (531), Expect = 0.0
Identities = 551/565 (97%), Gaps = 12/565 (2%)
Strand = Plus / Plus
Query: 5 gaattcctgggtatggatccccccccccttttcttttttttctttgcgccagtgtctcag 64
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgggcatggttccccccccccttttcttttttttctttgcgccagtgtctcag 264
Query: 65 gatagccctggctatcctggatgctgttatgtagtcctggctggcttcatccttcacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatagccctggctatcctggatgctgttatgtagtcctggctggcttcatccttcacaga 324
Query: 125 ggtctgttcatgcttctcaggtgctggaattaaaggtgtgtgtcaccacacccagctttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtctgttcatgcttctcaggtgctggaattaaaggtgtgtgtcaccacacccagctttt 384
Query: 185 atcttattttaagtaggtgaaatctaaaattttcttacagggcagaggtgtggctcactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcttattttaagtaggtgaaatctaaaattttcttacagggcagaggtgtggctcactg 444
Query: 245 gtagtgctagccttttgaagtccctgggttcaagtctccagagcggccaatgaggagaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagtgctagccttttgaagtccctgggttcaagtctccagagcggccaatgaggagaat 504
Query: 305 gtcctaagaatacggtggctaacataaagagctattttttttttctgccccttaactgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcctaagaatacggtggctaacataaagagctattttttttttctgccccttaactgct 564
Query: 365 gagcagaccactgtcccataagctgcatctggaacagcatttatgtatgtatgtatgtat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagcagaccactgtcccataagctgcatctggaacagcatttatgtatgtatgtatgtat 624
Query: 425 gtatgtatgtat------------taattatatgtaagtacactgtagctgtgttcagac 472
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtatgtatgtatgtatgtatgtattaattatatgtaagtacactgtagctgtgttcagac 684
Query: 473 atcccagaagagggcatcagatctcattatggatggttatgagccaccatgtggttgctg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcccagaagagggcatcagatctcattatggatggttatgagccaccatgtggttgctg 744
Query: 533 ggatttgaactcagggcctctggaa 557
|||||||||||||||||||||||||
Sbjct: 745 ggatttgaactcagggcctctggaa 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_h05.g1 MSMg01no407_h05.g1 CHROMAT_FILE:
MSMg01no407_h05.g1 PHD_FILE: MSMg01no407_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:06 2005
(487 letters)
>mm_chr4_141183826_141184718
Length = 893
Score = 746 bits (386), Expect = 0.0
Identities = 421/444 (94%), Gaps = 21/444 (4%)
Strand = Plus / Minus
Query: 60 gttgagtggctttgttatctttgttttctcgctgtgtttgggaacccg----------gg 109
||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 893 gttgagtggctttgttatc----ttttctcgctgtgtttgggaacccggggagagcttgg 838
Query: 110 taattttggaaatacaggttgtcaggtcgagtggcacacttcaaatccagtgtgagagat 169
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 837 taattttggagatacaggttgtcaggtcgagtggcacacttcaaatccagtgtgggagat 778
Query: 170 aggcgtatgctacatacatcctctgctacataacaagttccaggccagcctgggctgcat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aggcgtatgctacatacatcctctgctacataacaagttccaggccagcctgggctgcat 718
Query: 230 cagaccctgtcttaaaagaaaaagaaaaaaagctgttacacacaaacacacaca------ 283
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 717 cagaccctgtcttaaaagaaaaag-aaaaaagctgttacacacaaacacacacacgcgcg 659
Query: 284 cgcgcgcgcgcacaagcatgtgcaaacgtccctagagaccgaggcccagtacctgcgcac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgcgcgcgcgcacaagcatgtgcaaacgtccctagagaccgaggcccagtacctgcgcac 599
Query: 344 ctcagcccactccagggtctcccacccctgcctccaccctcccatttcaccctcttcctc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctcagcccactccagggtctcccacccctgcctccaccctcccatttcaccctcttcctc 539
Query: 404 tggcccagtggggaacagtgcggtggctgccggagatccaacaccacggatcggccccac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tggcccagtggggaacagtgcggtggctgccggagatccaacaccacggatcggccccac 479
Query: 464 gccttccaggtcattctggctgac 487
||||||||||||||||||||||||
Sbjct: 478 gccttccaggtcattctggctgac 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 893
Length adjustment: 10
Effective length of query: 477
Effective length of database: 883
Effective search space: 421191
Effective search space used: 421191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
