XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATTTGTCAGAATGTAAGGTATGGTTGTATGCTTTCTTTGATTCCTCAAG
TCTGCCCTCCCCACCTTCCTGGAGCCATTATTCTTCACTGCAATGTGTTC
CACTTTGCCNAGTTTANGAACTACTATAGCGCAGCCNACGCACCCGNNNN
CCAACAGAACAACAACTCTCCGNNNNAGGCGGGGGGCTGGGGCGGGCCGC
TTCCCGGNNACCCCGCGGAGNNNNTAAACCCCCCCATACCATGCGCTTGC
CACCAAAAAATAAGGGCTCGGGCTAAACTCTTCACCGCANNNGAAAAAGG
GGAAAAAAACCCCCCCCCCGGAAAGGAAAACCCCCCTCCGCCGCCCTTTT
TTTTTCCCCCCAAAAATCCCCTTTGGAATTTTTTTTTAAAAAACAAGACG
CCCCCTTTTTAAAATTCCCAAAAAAAAAAAAAAAAAAATTTGGGGTTTTT
TTTGAAAGGCCCCTAAAACAACCTTTTTTATAAAACCTTTTTATATAAAA
ACCCGCCGCCTCCATAAATATAACTTTTTTTTTTTCTTCTCCCCCTCCCC
TTTATCCTTTTCAAAAACAAAAAACATAAAAATTTTTTTTTTTTTTTTTA
TATCACCCCCCCTTCCCCCCANNNNNNNTATNTATTATTCAAACTATTAT
TTTAAACTTTCCCATTACCCCTTTATTTTATTTACTTATCTTATAAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCTGAATTTTATGTGATTTTTTTTT
TGCCTTTTTTTTTCAAAGAAAGGTCCTCTCTCTCTTCTGCACACAGCAGC
AGTATCTTGCCACAGTGACAAAATGGCTGAAAATAACCAGCTGTTCCAGG
ATCTCTCTCAAAACACACACCATAATCCCAAAGAATTCTCGCCATTTAGC
ACTGTCAGGTTGAAAAGTCGGCAGAGGAAATGAAACTAAACTTGCTTTTC
ACAACACGCAGCAAACCATTTCCACAATGAATTTGGAGAAAACATATATG
CTCTTCTCAGACCAGCTCCAAAATAATCTGGGAAGAAAATGAAGTCAGTT
GTCTTAATACATTTTTTTAAGAAGGCAATTTGGTTGAAGTTCAAAGAGGA
CTCTAAGATTATTTTCTTGAAAACAGTCAAAATAGGTCAACCCGTGAGAA
TCAAAGCGGACATTCATTCCATTCTTCCTAAGTCTCCAAACAAAGCAGGA
AATGCTTGTCTAAAAGTCCTCAGAAAAACACAGCTCCCCAGACATGGNCA
TTCCTTATTTGGTGCAGNGGATGTAAGATCCTGAAACTGTGTGTCTGTCA
ATGNNCTCTTTGTTTAATTGGTTCCCATTGAAGACCCCTGGTGAACCATC
CTTTCAAAAAGCTCCCCCCGAGATTATTTGGAAAAAATCAGGGAAAGAGG
CCACGAAAAAAAAA

Query= MSMg01no407_h17.g1 MSMg01no407_h17.g1 CHROMAT_FILE:
MSMg01no407_h17.g1 PHD_FILE: MSMg01no407_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:08 2005
         (491 letters)



>mm_chr4_13167940_13168825
          Length = 886

 Score =  907 bits (469), Expect = 0.0
 Identities = 484/491 (98%), Gaps = 5/491 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctgaattttatgtgattttttttttgcctttttttttcaaagaaaggtcctctctc 60
           |||||||||||||||||||||||||||   ||  ||||||||||||||||||||||||||
Sbjct: 686 tcttctgaattttatgtgatttttttt---cc--tttttttcaaagaaaggtcctctctc 632

                                                                       
Query: 61  tcttctgcacacagcagcagtatcttgccacagtgacaaaatggctgaaaataaccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 631 tcttctgcacacagcagcagtatcttgccacagtgacaaaatggctgaaaataaccatct 572

                                                                       
Query: 121 gttccaggatctctctcaaaacacacaccataatcccaaagaattctcgccatttagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gttccaggatctctctcaaaacacacaccataatcccaaagaattctcgccatttagcac 512

                                                                       
Query: 181 tgtcaggttgaaaagtcggcagaggaaatgaaactaaacttgcttttcacaacacgcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgtcaggttgaaaagtcggcagaggaaatgaaactaaacttgcttttcacaacacgcagc 452

                                                                       
Query: 241 aaaccatttccacaatgaatttggagaaaacatatatgctcttctcagaccagctccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaaccatttccacaatgaatttggagaaaacatatatgctcttctcagaccagctccaaa 392

                                                                       
Query: 301 ataatctgggaagaaaatgaagtcagttgtcttaatacatttttttaagaaggcaatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ataatctgggaagaaaatgaagtcagttgtcttaatacatttttttaagaaggcaatttg 332

                                                                       
Query: 361 gttgaagttcaaagaggactctaagattattttcttgaaaacagtcaaaataggtcaacc 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 331 gttgaagttcaaagaggactctaagattattttcctgaaaacagtcaaaataggtcaacc 272

                                                                       
Query: 421 cgtgagaatcaaagcggacattcattccattcttcctaagtctccaaacaaagcaggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cgtgagaatcaaagcggacattcattccattcttcctaagtctccaaacaaagcaggaaa 212

                      
Query: 481 tgcttgtctaa 491
           |||||||||||
Sbjct: 211 tgcttgtctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 886
Length adjustment: 10
Effective length of query: 481
Effective length of database: 876
Effective search space:   421356
Effective search space used:   421356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)