TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGAAACTTATGTCTACCTGACCCCAGCCACAGCCAAATGACAA
CCAAGATTAGCCATTACAGACATAGTAGACCAGGTAACCATACAGGTGCA
AAATATTTCCACAGCACTGTGCCTAAAGCATGGTTAGCTCTGAAGATAAA
GTCAGAAAAATTGGGATGGAGAGCAGGCAAGACTTCACAACTATATTCTC
CTTTATCGCACCCTTGGTAGTTATGAGCTGGTTTCTATCATGTTTCAAAC
GCTGATATTTTCAGAAACTGCTCTGATCTTATCATTATTATACCCCATCT
TTGTAGCTTTTTCTTATCCTTCTGGAACCTCAATATGAATCGCTCATGTA
TCTTTCAAAATATGGCATGTTGTATTTTCTAAATATTGGTAAAGCAATAA
CTCCAGTCCAATCTACCTTCAGTCCACAGCCTCCGCAATACAAGAAGTAA
AGTCTATGTTTTCTATTCTTGTGAGGAGTTAAGCCTTGTGGCTACCTTGC
ATAGGAGGTAGCAAAAGTAATGCTCTGTGAGTTTCACAGCTATTTCCAAA
AAAATGTAATGAAGGAATACTGTCTGGCATATGTTTTGTGATGGATATCT
AAGGATACAGCTATTATGTTCTGTTCTGTTACATCTTGTTATGTCATGAA
CCTAAGGGTTCCCCGCAACGTTCTCCAAAATTATTCCGTATCTTAAGAAA
AAACTACCGTAA

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTACCTCTGTTCCCCAACTT
TTAATAGGGTTATTTGGTTCTCTGGAGTTTTGTATATATTGGATATTAGC
CCTCTATCATATGTAGAATTGGTAAAGATCTTTTCTTTTTCCATTCTGTT
GGTTGCCATTTTGTCCTATTGACAGTGTCCTTTGCCTTACAAAAACTTTG
CAATTTCATGAGGTTCCATTTGTTAATTCTTTTTTTTTTTTTTTTTTTTT
TTTGGGTTTTCAAGAAAGGGTTTCTCTGTATAGCTCTGGCTGTTCTGGAA
CTCACTCTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCT
GCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTCCCGGCCCATT
TGTTCATTCTTGATCTTAGAGCATGAGCCACTGGTGTTCTGTTCAGGAAA
ATGTCTAAAGTTTTCAGGTGTTCCCGGCTCTTCCTCACTTTCTCTCCTAT
TAACTACAGTGTATCTGATTTTATGTGGAAGACCTTGATCCCCTTATAAG
TGAGTTTTTGTGAAAGAGATAAAAATGATTAATTGGCTTTTTTCTAATGG
CGAAACCATTTGTCCCCGATCAATTGTTTATAAGGCTTTTTTATTCCCTG
CGGGTTTTTGCCTCTTTTCAAAATATTGGCCATCATGTGGGGTT

Query= MSMg01no408_b09.b1 MSMg01no408_b09.b1 CHROMAT_FILE:
MSMg01no408_b09.b1 PHD_FILE: MSMg01no408_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:57 2005
         (515 letters)



>mm_chr4_80078523_80079437
          Length = 915

 Score =  967 bits (500), Expect = 0.0
 Identities = 509/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagaaacttatgtctacctgaccccagccacagccaaatgacaaccaagatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagaaacttatgtctacctgaccccagccacagccaaatgacaaccaagatt 263

                                                                       
Query: 64  agccattacagacatagtagaccaggtaaccatacaggtgcaaaatatttccacagcact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agccattacagacatagtagaccaggtaaccatacaggtgcaaaatatttccacagcact 323

                                                                       
Query: 124 gtgcctaaagcatggttagctctgaagataaagtcagaaaaattgggatggagagcaggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgcctaaagcatggttagctctgaagataaagtcagaaaaattgggatggagagcaggc 383

                                                                       
Query: 184 aagacttcacaactatattctcctttatcgcacccttggtagttatgagctggtttctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagacttcacaactatattctcctttatcgcacccttggtagttatgagctggtttctat 443

                                                                       
Query: 244 catgtttcaaacgctgatattttcagaaactgctctgatcttatcattattataccccat 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgtttcaaacgctgacattttcagaaactgctctgatcttatcattattataccccat 503

                                                                       
Query: 304 ctttgtagctttttcttatccttctggaacctcaatatgaatcgctcatgtatctttcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 ctttgtagctttttcttatccttctggaacctcaatatgaatcgctcatgtatctttcac 563

                                                                       
Query: 364 aatatggcatgttgtattttctaaatattggtaaagcaataactccagtccaatctacct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatatggcatgttgtattttctaaatattggtaaagcaataactccagtccaatctacct 623

                                                                       
Query: 424 tcagtccacagcctccgcaatacaagaagtaaagtctatgttttctattcttgtgaggag 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 tcagtccacagcctccgcaatacaagaagtaaagtctattttttctattcttgtgaggag 683

                                           
Query: 484 ttaagccttgtggctaccttgcataggaggta 515
           ||||||||||||||||||||||||||||||||
Sbjct: 684 ttaagccttgtggctaccttgcataggaggta 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)