NAATGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTACTTCTGAGCCCCATTTTTTAATGGGGTTAT
TTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATANTGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTGGTCAGAAATTTTTCCCTTGTGCCCATATTTTTCAAGGCTT
TTCCCCCAACTTTCCTCCCCTTAAAAGTTTCCACAAAAGAAAATTTCCCC
ACCCCCCCATTGGGGGTGGGCCCCCCTGGGGGGGGCCCCTTTCCCCCCCC
CGGGGGGGGGAGAGGAAAATNTTTTTTTCTTTTTCAAAANAGAACAANCA
AATATTNNNNCCTCCCTTTTTNNTNTTCTTTGNTTTACCCNNANCNNNNN
TTGTTCCTCTTTTTCTTTTGGGGGGAGGTGGCCCCCCCCCCCCCCCCCCC
CCCCCAAAAAAAAAAATATATTTTTTTATTTTTTTTCCCCCCCC

GATTGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTGACATTCTGGAACACAGGCTATTTTTG
TGTTGCTTATGAAGTTTGGAAATTGGTTCTGACTGATCAACAGTGAAACA
TGTGGAAGATTCCAATCTGTTTGTTGTGTATATACAGAGTTTAGACAATG
GTAGTTTATATAGAGATTTGAACTTTTTTATATCCTTATAAGTGACTCCT
TATAAGTGACACAATTACTGGGGAAGGAAAGAAGATAAGTAAGAAACACT
TCAATTGACATATATTTATCCAATGAAAAAGAAAAGATTTTTTTGTTTTG
TGTTTTGTTTTGTTTTGTTTTCGCCTGCATTTGAATGAAGCAAAACTAAG
TTATCCTGTCAGGAATGATTCGATGCTCACTGTAAGTCGTTTTCCTCCTC
ACTCTCCCTTCTACCTCTCTCTTTCTCTACATCCATTTCCTACTACAACA
CATGTTTTTATCCCTTTAGCCCCCTAGGGAAAAAAAAAGTCCTCACACAG
TGAGTGCTGAGCCACATTTAANAAGCAATACAAATGCATTCTGAGATACC
TTCATTTTTAATGTAACTTTCAAGCAGTTGGTCCTTGTCAGATGGCATCA
GACACAGTGTTTAATGGAGGCATCGCATAAAAAAAACTGGTCTTGTCACC
CCTTCTAGAAACCCTGAGGAAGGAAGTAATCCTTTTCTGGAAAATGTATT
TTGTTT

Query= MSMg01no408_g11.g1 MSMg01no408_g11.g1 CHROMAT_FILE:
MSMg01no408_g11.g1 PHD_FILE: MSMg01no408_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:22 2005
         (527 letters)



>mm_chr4_16643891_16644817
          Length = 927

 Score =  982 bits (508), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgacattctggaacacaggctatttttgtgttgcttatgaagtttggaaattggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgacattctggaacacaggctatttttgtgttgcttatgaagtttggaaattggttct 260

                                                                       
Query: 61  gactgatcaacagtgaaacatgtggaagattccaatctgtttgttgtgtatatacagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgatcaacagtgaaacatgtggaagattccaatctgtttgttgtgtatatacagagt 320

                                                                       
Query: 121 ttagacaatggtagtttatatagagatttgaacttttttatatccttataagtgactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagacaatggtagtttatatagagatttgaacttttttatatccttataagtgactcct 380

                                                                       
Query: 181 tataagtgacacaattactggggaaggaaagaagataagtaagaaacacttcaattgaca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tataagtgacacaattactggggaagcaaagaagataagtaagaaacacttcaattgaca 440

                                                                       
Query: 241 tatatttatccaatgaaaaagaaaagatttttttgttttgtgttttgttttgttttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatttatccaatgaaaaagaaaagatttttttgttttgtgttttgttttgttttgttt 500

                                                                       
Query: 301 tcgcctgcatttgaatgaagcaaaactaagttatcctgtcaggaatgattcgatgctcac 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgcttgcatttgaatgaagcaaaactaagttatcctgtcaggaatgattcgatgctcac 560

                                                                       
Query: 361 tgtaagtcgttttcctcctcactctcccttctacctctctctttctctacatccatttcc 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaagtcgttttccacctcactctcccttctacctctctctttctctacatccatttcc 620

                                                                       
Query: 421 tactacaacacatgtttttatccctttagccccctagggaaaaaaaaagtcctcacacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactacaacacatgtttttatccctttagccccctagggaaaaaaaaagtcctcacacag 680

                                                          
Query: 481 tgagtgctgagccacatttaanaagcaatacaaatgcattctgagat 527
           |||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 681 tgagtgctgagccacaattaaaaagcaatacaaatgcattctgagat 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)