BAC Information

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BAC

Clone NameMSMg01-408G15
Chromosome4 (Build37)
Map Location 74,981,834 - 74,982,304
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529
Downstream geneLOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408G15.T7 (MSMg01no408_g15.b1)MSMg01-408G15.TJ (MSMg01no408_g15.g1)
ACCAG506138AG506139
length768772
length of high quality
(start - end)		582 (39 - 620)546 (68 - 613)
definitionCHROMAT_FILE: MSMg01no408_g15.b1 PHD_FILE: MSMg01no408_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:23 2005CHROMAT_FILE: MSMg01no408_g15.g1 PHD_FILE: MSMg01no408_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AAGGAAGATGCAGGCTGGTTTAGAAAATTAGAAAAGCATCCTAATCAGAT
TATACCTTTCTGTGAGGGATAGAAGCCACTTTTATGAGTTTGATATCTTC
CATATTGCCTATCTCTGTAGCTTGCCAGTGAAATGCAATCAACTATAACT
CAATTTGCTATATTACAAGGAATGATAGTAAAAATCTAAAGGAGGGTTGG
AAAAAATTAGTATCATGCTACTTAGTGTGGGATTAAGTTCCACTTAGGGA
AACTCAATTCTTGCTGCTCTTCCCAAGGACCTGAATTCAGTTTCCAGTAT
TCACAACTATGCAGACTGGTAACTCCAGCTGCAGGGGGTTCTATACCCTT
TTATGGCACCCACACATATCACACACACACACACACATACACACACACAC
ACACACACACACTTAAAATAAATATAAAATAAAATTATTAAAGATATTTG
AACTCAGAGCTATCTGCAGAAATAGGAGATCCCAAAGAAATGCTATAGTT
TGTAGGATGGAAAACCAAGCCAAATCTGCTAAAACTGGACTCCAATAACA
CACACAAGTGACTATCTAGAAGAGTGTCCATTTCTGGAGATNGTGTGACT
GACACAGGTGTACAAAAGTACTTTTACACTGTATAATCCAGTGTTGCAAA
AAAAAAGGGTAAGCTATAAACTTTGGTGACCTTGAGATGCCAATTTCTCT
TCAGGGAACAAATATCCT

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTATATATTTTTGATATTAGTTCTCTGTCAGA
TGTAGGGTTGTTGATAACTTTTTTCACATTCTGTGGGCTGCCATTTTGTC
TTATTGATGGTGTGCTTTGCCTTACCGAAGATTTTCAGTTTCCTGAGGTC
TCATGTATTAATTGTTGATCTCAGTACCTGAGCTATTGGTGTTCCCTTCA
GGTATTTGTCTCCCATACTAATGAATTCAAGGCAGTTCTCCACTTTCTCT
TCTATTCGATGTAATGCGTCTGATTTTATGTTGATGTCTTTAATCCACTT
GGACTTGAGTTTTCTGTATGGTGATTAAATACAGGTTCTGTTTTCATTCT
TCTACATGCAGATATTCAGTTAGACCAGTGCTATTTACTAAAATACTTTT
TCCCAATTTGAGCATCTTTGTCAAAAATCAAGTGTTGCTAGGTATGTGGC
TTTATTTCTGAGTCTTTAACTCTATTCCATTGATCAACTTGCCTGTTTTT
ATGTCAGTACTGTGCAGTTACTGAAGAAAGGTAAAACAAAAGGACTCTGA
AGTTCCATCTTGCACCTTTCAGAATAGCTAAGCCCAAAAATTCAAGTGAC
AAATCATGCTCGTGAGACTACAGAGAAAGGGGAACCCTCCTCATTTGTTG
TGAGAGGGGAAATTTGTACAATCACCTTTGGAAACCATTTTGAAGGTTTC
TCCAAAATTTTTTAAAATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_g15.b1 MSMg01no408_g15.b1 CHROMAT_FILE:
MSMg01no408_g15.b1 PHD_FILE: MSMg01no408_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:23 2005
         (582 letters)



>mm_chr4_74981834_74982815
          Length = 982

 Score =  760 bits (393), Expect = 0.0
 Identities = 450/491 (91%), Gaps = 35/491 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaggaagatgcaggctggtttagaaaattagaaaagcatcctaatcagatta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattcacaaggaagaggcaggctggtttagaaaattagaaaagcatcctaatcagatta 412

                                                                       
Query: 65  tacctttctgtgagggatagaagccacttttatgagtttgatatcttccatattgcctat 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 411 tacctttctgtgagggatagaaaccacttttatgagtttgatatcttccatattgcctat 352

                                                                       
Query: 125 ctctgtagcttgccagtgaaatgcaatcaactataactcaatttgctatattacaaggaa 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctctgtagctggccagtgaaatgcaatcaactataactcaatttgctatattacaaggaa 292

                                                                       
Query: 185 tgatagtaaaaatctaaaggagggttggaaaaaattagtatcatgctacttagtgtggga 244
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 291 tgatagtaaaaatctaaaggagagttggaaaaatttagtatcatgctacttagtgtggga 232

                                                                       
Query: 245 ttaagttccacttagggaaactcaattcttgctgctcttcccaaggacctgaattcagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttaagttccacttagggaaactcaattcttgctgctcttcccaaggacctgaattcagtt 172

                                                                       
Query: 305 tccagtattcacaac---------------tatgcagactggtaactccagctgcagggg 349
           |||||||||||||||               |||| |||||||||||||||||||||||||
Sbjct: 171 tccagtattcacaactatggtatggtatggtatgtagactggtaactccagctgcagggg 112

                                                                       
Query: 350 gttctatacccttttatggcacccacacatatcacacacacacacacacatacacacaca 409
           ||||||||||||||||||||||||||||||||                    ||||||||
Sbjct: 111 gttctatacccttttatggcacccacacatat--------------------cacacaca 72

                                                                       
Query: 410 cacacacacacacacttaaaataaatataaaataaaattattaaagatatttgaactcag 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  cacacacacacacacttaaaataaatataaaataaaattattaaagatatttgaactcag 12

                      
Query: 470 agctatctgca 480
           |||||||||||
Sbjct: 11  agctatctgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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