BAC Information

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BAC

Clone NameMSMg01-408H04
Chromosome4 (Build37)
Map Location 94,975,289 - 94,975,568
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408H04.T7 (MSMg01no408_h04.b1)MSMg01-408H04.TJ (MSMg01no408_h04.g1)
ACCAG506164AG506165
length1,016796
length of high quality
(start - end)
---280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no408_h04.b1 PHD_FILE: MSMg01no408_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:26 2005CHROMAT_FILE: MSMg01no408_h04.g1 PHD_FILE: MSMg01no408_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCAAAAAACAGAAAACAAAGAAAAAGAAGGGCTAAAAAACTTGGGGG
CGCGNNNAAGGGGGAGGATCGGGGGGTACACGAGGGGTCCCCCGAGGGAG
GGGGAAGAAAAAAAAAACGAGGGCCCCCACAAAGAAAAAAAAAAACCCCG
NGGGGGGGGAATTTCTCCCCCACCAAAAAAAGCGGGGGGCGCCNNNNAAC
AAAAAACGGGGGAAAGAACATCTTTTTCCCCCCCCCAAAAAAGGGAGAGG
GGGGGGAAGACCGCGGCGGGGGGGGGCGTCGNGGCGCTCTCCCCCCCACG
CGCGCGGCCCAGAGAGGAAGGAAAAAAAAGGAAGAGAAACATCACAAAAA
AGGGACGGGGAATGGCGTAGACGGGAAGGGGAGTGTTCGTGGGGAAAGAG
AGCGACTCAACTCGCCCCAAAAGAACCGCGAGCGGGGGAAAAAAGAATAA
AGAGGGAAGCGAAGGTAATAAGGGGCGGAGGGGCGGACGGAAGTGATGAG
CGGGGGAAAGAAAAAACCAAAAAGAGGGGAGAAACGGGGGACCGAAGGAG
GGGAAGCGAAGATCGAAAACGACAAAAGCGGTAGATAAGGATCGGATAAA
GCGGGAGGGGGAAGAAGGGGGAGGGGAGAGGAAATGAAAGCAGCAGGAAT
GAAAAAAAAGAAATAGGGAAGGCACGTGGGAAAAGCGAGGGGAGAAGCGG
GAAACGAAAGGAGATAGGAAGGAAGAAAGAGAGGGAAAAAAGTGCACGGG
AGTGGAGGGAGAAAACAGGGGATGAGAATAAGGAAAGAGGGGCGCGTGAA
AGAGGAGGAAAGCGATAAAGGAAGGAGGGAGCGGAGAGAAAAAAAGAAAA
GGAGGGAACTAGCAACAAATACGCCAACAGTAGCGGTTAATTAGACAGAC
TGAGTAGAACGGAATAGAAAGAGGGTGCGTAGAGCGGACGAGAAGAGAGA
CCAGACGAACAGGGAAAATGGGAGTCGACATAATTGATAAATTGCAGACG
AGGCCTGAAATATATG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTGGGCAGACCCCAAGTTTC
TACTGAATGCATACCACACCCACACTCCAGAGCCCCACAACTGTGTCAAA
TGCATGCTTGACTTGATTTCTGTACAAAGACTTGATGTAGAGCCAGGGAA
TTTCAGAGCTGTGCCTGCAAGTCTGGAATTTAAATATTAGCCTTCGTGAC
CTGGACAGCTTTGATCTCTCGAGTTTACATTCACAAGTATTGATAACATA
GCTCAAATCACAAGCAAGAACGCAGGGCCTGTAGCCCACAGCTGCCAAGT
GTGTGCATGTGTACAGGATCTTTGCTGAAATGAAAATGGACTTGTCTTAT
GAAAGCTTTTATCTGATGCTGGGTGAGCGTCTCTTCCGTTTCTTGACAAC
TTTATATCTTTTCTCTTTGTTCCGCTCGCCCCGTCTTTCTTCATCTTTCT
ATCCCTTCTTTCTACTGTTCCCTTCTCTCCATTATCCTTTCTATTTCTAC
CACTATAATATTCCCCACCATCCTCCCCTCTCCATTTTCTCTTTCCCTTT
TCTTTCTTTGCCCGCCCCCCTACTTTTCTTATCTCCTTCCTCCCTTTTTC
TTATCGCTTTTTTTCCCTTTCCACATTTCCTTTTCTTTATCTTCTCACCT
CCTTTTCAATAATTATCCTCTCTCCCTCTTCCACTCTACCTCCTTTCTTC
TTCCCTCATTACTTCCTTTCCTTCCCCTTTCTCTCCCTTCTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_h04.g1 MSMg01no408_h04.g1 CHROMAT_FILE:
MSMg01no408_h04.g1 PHD_FILE: MSMg01no408_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:26 2005
         (280 letters)



>mm_chr4_94975089_94975768
          Length = 680

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattctgggcagaccccaagtttctactgaatgcataccacacccacactccagagcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cattctgggcagaccccaagtttctactgaatgcataccacacccacactccagagcccc 421

                                                                       
Query: 61  acaactgtgtcaaatgcatgcttgacttgatttctgtacaaagacttgatgtagagccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acaactgtgtcaaatgcatgcttgacttgatttctgtacaaagacttgatgtagagccag 361

                                                                       
Query: 121 ggaatttcagagctgtgcctgcaagtctggaatttaaatattagccttcgtgacctggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggaatttcagagctgtgcctgcaagtctggaatttaaatattagccttcgtgacctggac 301

                                                                       
Query: 181 agctttgatctctcgagtttacattcacaagtattgataacatagctcaaatcacaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agctttgatctctcgagtttacattcacaagtattgataacatagctcaaatcacaagca 241

                                                   
Query: 241 agaacgcagggcctgtagcccacagctgccaagtgtgtgc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agaacgcagggcctgtagcccacagctgccaagtgtgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)