BAC Information

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BAC

Clone NameMSMg01-408K11
Chromosome4 (Build37)
Map Location 145,752,509 - 145,753,096
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408K11.T7 (MSMg01no408_k11.b1)MSMg01-408K11.TJ (MSMg01no408_k11.g1)
ACCAG506322AG506323
length745757
length of high quality
(start - end)		588 (43 - 630)484 (74 - 557)
definitionCHROMAT_FILE: MSMg01no408_k11.b1 PHD_FILE: MSMg01no408_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:42 2005CHROMAT_FILE: MSMg01no408_k11.g1 PHD_FILE: MSMg01no408_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATTTTATGCCAATCTAATATCCTCATCTGCCTGGCTATTATCTTGT
TCTGAGCATTTCAGCCTAAATAGGGAGACCTTGGAGAGGATTCAGATTGT
GACCTTGAGTATATTGTGTGATATCTGGAGCTCGCTTTCATCATCTATGT
CAATGCCAGTGAGAGGTGAAGTGGATATTACAGTCACTGTTTAGAATTAC
AACAGGGCCGCTAACTGAAGAGCAGTAATTCACTTCAACTGTCTATGGCC
ACAGCCACACTGGGTGCTGTAGATTTTATTCCTGTATTGTCTAAAGGGTT
TGTCCTCTTGATCTCCTTGCTGGGACCTGACCTGTGCTCTCTGTCCAGAA
TTAACAATGAGGAATCAAGCCAGAATTGGTGTAGCAGTGGAGGATCTCTT
GAGTTTGGGGCCAACCTGATCTACAGAGAAAATTTCAGGACAGTCAGGAC
TTCACAGAGAAACCTTATCCTTAACATCTCATGGCTGATTGCTCACTCTA
AAGCATGGTGAATCTGCTTTCCTCCTCTTGCATCTCTTAGCCTGCCTATG
GAAACCTAGAATTCCCACCTCTTCTTAGCCATTAGCAGCTAGCATCCTCA
TTGATTGATTAAAAACTACCTAGGNATCAGGAACTTCTGTGCTCACAAGC
AGATTCCCAATCAAAGCACAGAACCATACCCTGCTGATAATAAAG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATGGGCA
TCTCTTTCTTTAGATTAGGGAAGTTTTCTTCTATAATTTTATTGAAGATG
TTTACTGGCCCTTTAAGTTGGGAATCTTCACTCTCTTCTATACCTATTAT
CCTTAGGTTTGGTCTTTTCATTGTCTCCTGGGTTTCCTGGATGTTTTGTG
TTAGGAGCTTTTTGCTTTTTGCATTTTCTTTTACAGTTGTGTCAATGTTT
TCTATGGTGTCTTCTACACCTGAGATTCTCTCTTCTATTCTGTTGGTGAT
GCTTGTATGTATGACTCCTGATCTCTTTCCTAGGTTTTCTAACTCCAAGG
TTATCTCCCTTTGTGATTTCTTGTTTATTGTTTCTGTTTCCATTTTTAGA
TCCTGGATGGTTTTGGTCAATTCCTTCCCCTGTTTGGTCGTGTTTTCCTG
CTATTTTTTAAAGGGATTTTTGTGTTTTCTCTTTAAGATTTTCTACCTGC
TAACCTGTGTTCTTCTGTATTTCTTTAANGAAGTTATTTATATCCTTTCT
ACAGTCCTCCATCATCATCATGAAATGTGATTTTTAACCGAGCCTTGCTT
TTCCTGTGGGTTGGGGTATATTCTTGGCTCCTGTGGGGAGAAAAACGGGC
TTCTATTATTGCACGGAGCTCTCGGTTCCTGCCGCCTATGTCTTCCCCTT
CCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_k11.b1 MSMg01no408_k11.b1 CHROMAT_FILE:
MSMg01no408_k11.b1 PHD_FILE: MSMg01no408_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:42 2005
         (588 letters)



>mm_chr4_145752306_145753293
          Length = 988

 Score =  944 bits (488), Expect = 0.0
 Identities = 562/588 (95%), Gaps = 3/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacattttatgccaatctaatatcctcatctgcctggctattatcttgttctga 63
           ||||||||||||||| | ||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 204 ggaattcacattttaggtcaatctaatatcctcatctgcctggctgttaccttgctctga 263

                                                                       
Query: 64  gcatttcagcctaaatagggagaccttggagaggattcagattgtgaccttgagtatatt 123
           ||||||||||||||| || |||||||  ||| || |||||||||||||||||||||||||
Sbjct: 264 gcatttcagcctaaacagagagacctcagagtggtttcagattgtgaccttgagtatatt 323

                                                                       
Query: 124 gtgtgatatctggagctcgctttcatcatctatgtcaatgccagtgagaggtgaagtgga 183
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 gtgtgatatctggagctggctttcatcatctatgtcaatgccagtgaaaggtgaagtgga 383

                                                                       
Query: 184 tattacagtcactgtttagaattacaacagggccgctaactgaagagcagtaattcactt 243
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 384 tattacagtcactgtttagaatgacaacagggccactaactgaagagcagtaattcactt 443

                                                                       
Query: 244 caactgtctatggccacagccacactgggtgctgtagattttattcctgtattgtctaaa 303
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 444 caactgtctatggccacagccacactgggtgctgcagattttattcctgtgttgtctaaa 503

                                                                       
Query: 304 gggtttgtcctcttgatctccttgctgggacctgacctgtgctctctgtccagaattaac 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 gggtttgtcctcttgatctccttgctggggcctgacctgtgctctctgtccagaattaac 563

                                                                       
Query: 364 aatgaggaatcaagccagaattggtgtagcagtggagga---tctcttgagtttggggcc 420
           |||||||||||||||||||||||||||||| | ||||||   ||||||||||||||||||
Sbjct: 564 aatgaggaatcaagccagaattggtgtagctggggaggagaatctcttgagtttggggcc 623

                                                                       
Query: 421 aacctgatctacagagaaaatttcaggacagtcaggacttcacagagaaaccttatcctt 480
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacccaatctacagagaaaatttcaggacagtcaggacttcacagagaaaccttatcctt 683

                                                                       
Query: 481 aacatctcatggctgattgctcactctaaagcatggtgaatctgctttcctcctcttgca 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aacatctcatggctggttgctcactctaaagcatggtgaatctgctttcctcctcttgca 743

                                                           
Query: 541 tctcttagcctgcctatggaaacctagaattcccacctcttcttagcc 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctcttagcctgcctatggaaacctagaattcccacctcttcttagcc 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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