Query= MSMg01no408_n13.b1 MSMg01no408_n13.b1 CHROMAT_FILE:
MSMg01no408_n13.b1 PHD_FILE: MSMg01no408_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:58 2005
(488 letters)
>mm_chr4_114365118_114366005
Length = 888
Score = 891 bits (461), Expect = 0.0
Identities = 479/485 (98%), Gaps = 2/485 (0%)
Strand = Plus / Minus
Query: 5 gaattccctggttatcaccctagcagcacctgagggagagcaagtgccttgccaggaaga 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattccctggggatgaccctagcagcacctgagggagagcaagtgccttgccaggaaga 629
Query: 65 ggtcccacctgtgtggtttccaaggaaaacagtgccttgccttgacgtgtggagcgcctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggtcccacctgtgtggtttccaaggaaaacagtgccttgccttgacgtgtggagcgcctg 569
Query: 125 gagtggggcggactacacacaccataaattgccagcctgattttcatctgtatccactta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gagtggggcggactacacacaccataaattgccagcctgattttcatctgtatccactta 509
Query: 185 ccccccatgtccaaggttgaggcccttctgggccagaagggggtttgcacagctggattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccccccatgtccaaggttgaggcccttctgggccagaagggggtttgcacagctggattt 449
Query: 245 ggtgctgagaggggaggcctgagagccagcgacactgggaaagccacagatctggagacc 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 ggtgctgagaggggaggcctgagagccagcgacactggggaagccacagatctggagacc 389
Query: 305 tccagcagagaagactgagggcgggctacacggagcacctggggccacgcagtgtgtcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tccagcagagaagactgagggcgggctacacggagcacctggggccacgcagtgtgtcat 329
Query: 365 ggtgtgc-tcctgttctcagtcaaggtgtcttcccagctccatcctagagagagctagag 423
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggtgt-cttcctgttctcagtcaaggtgtcttcccagctccatcctagagagagctagag 270
Query: 424 ggaggagctgagagaccctcagaaacagaggatcaagccgaaaacagctagctcaaaacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggaggagctgagagaccctcagaaacagaggatcaagccgaaaacagctagctcaaaacc 210
Query: 484 ccagc 488
|||||
Sbjct: 209 ccagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_n13.g1 MSMg01no408_n13.g1 CHROMAT_FILE:
MSMg01no408_n13.g1 PHD_FILE: MSMg01no408_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:58 2005
(510 letters)
>mm_chr4_114211370_114212279
Length = 910
Score = 940 bits (486), Expect = 0.0
Identities = 504/510 (98%)
Strand = Plus / Plus
Query: 1 acactcccttctgcatttgccccatatgatgtaattagttccttctgctttacatctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 acactcccttctgcatttgccccatatgatgtaattagttccttctgctttacatttaga 260
Query: 61 acagaatttctacaaagttgttgcatttgcatgagccacatctgggcacagataaacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 acagaatttctacaaagttgttgcatttgcatgagccacatctgggcacagctaaacata 320
Query: 121 ggagctcatctcagcgaatggcccaatagaaggtggttgaagtgatgcagattcgaactg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ggagctcatctcagcgaatggcccaatagaagatggttgaagtgatgcagattcgaactg 380
Query: 181 aaggactaaatggtgtcagggtagtaggcaaagggctgtgacataacacaagcaactgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggactaaatggtgtcagggtagtaggcaaagggctgtgacataacacaagcaactgac 440
Query: 241 acaaaaaagatagacctcgcagctggactgccaaccagctgtggactggactcaagtcat 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaaaagatagacctcgcagctggactgccaaccagctgtggactggactcaagtcat 500
Query: 301 atggaccctgtctaagaaggaggcttcaagaaccaccctccctaccatggcacacatact 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 atggaccctgtctaagaaggaggcttcaagaaccaccctccctaccatggcacacataat 560
Query: 361 gctttttagttcttagagacagagacccattcaaagggtgatctataaagccttttggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctttttagttcttagagacagagacccattcaaagggtgatctataaagccttttggct 620
Query: 421 cacactcatgggcttatatcactctaaaaagtgtggtcagcatgatgttattacatagag 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cacactcatgggcttatatcactctaaaaagtgtggtcagcatgatgttattacatggag 680
Query: 481 gctgcaggggacagtgacatgatttacttg 510
||||||||||||||||||||||||||||||
Sbjct: 681 gctgcaggggacagtgacatgatttacttg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
