Query= MSMg01no408_p03.b1 MSMg01no408_p03.b1 CHROMAT_FILE:
MSMg01no408_p03.b1 PHD_FILE: MSMg01no408_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:06 2005
(473 letters)
>mm_chr4_118678508_118679380
Length = 873
Score = 673 bits (348), Expect = 0.0
Identities = 354/356 (99%)
Strand = Plus / Minus
Query: 5 gaattctagagcattctaggcagaagcaggcctcaggtcccaggtagtagagagctaccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaattctagagcattctaggcagaagcaggcctcaggtcccaggtagtagagagctaccc 297
Query: 65 aatgcgagtgctagattccgaattctggtccttatgactgaacagcaaacactcttaact 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 296 aatgcgagtgctagattccgaattctggtccttatgactgaacagcaaccactcttaact 237
Query: 125 actgagtcacctctcatggttttgtttctttgttttgttctttggagatagggtttctcg 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 actgagtcacctctcacggttttgtttctttgttttgttctttggagatagggtttctcg 177
Query: 185 gtgcagcctgagctgttctggaactcactctgtagacctgtaggctggcttccgactcgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtgcagcctgagctgttctggaactcactctgtagacctgtaggctggcttccgactcgc 117
Query: 245 agagatctgcctgcctctgccttccaagtgctggcctcaaaggcatgtgctgcctcctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agagatctgcctgcctctgccttccaagtgctggcctcaaaggcatgtgctgcctcctct 57
Query: 305 cagcccagctactatattttttgagacagatctctatttagcctcaagcacacagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 cagcccagctactatattttttgagacagatctctatttagcctcaagcacacagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_p03.g1 MSMg01no408_p03.g1 CHROMAT_FILE:
MSMg01no408_p03.g1 PHD_FILE: MSMg01no408_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:06 2005
(511 letters)
>mm_chr4_118491328_118492243
Length = 916
Score = 652 bits (337), Expect = 0.0
Identities = 433/469 (92%), Gaps = 9/469 (1%)
Strand = Plus / Plus
Query: 50 aaaactcaaatgatgcctaagcatgttactgaggcatgagttattttagtttgtaaccta 109
|||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaactgaaatgatggctaaacaggttactgaggcatgagttattttagtttgtaaccta 309
Query: 110 gtttcaacctgctggactaatgctcaagtatgcaaaccagcctactaatatgc--tgact 167
|||||| ||||||||| |||||||| ||||||||||||||||||||||| || ||| |
Sbjct: 310 gtttcagcctgctggattaatgctccagtatgcaaaccagcctactaat--gccctgaat 367
Query: 168 cagttgttggctctcagctcactggcgacttcttgcccactcagcaacctggcagtcata 227
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct: 368 cagttgttggctctcagctcactggcggcttcttgcccagtcagcaacctggcagttata 427
Query: 228 taggctttcttcaccatcttgccagagcttgtcctgaaatagcttttgctgtttttcaac 287
|| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 428 tatcctttcttcaccatcttgccagagcttgtcctgaaacagcttttgctattcttcaac 487
Query: 288 agtta-----gaagccacagcttgtcagagtgcacagaaccagtaagcccatcactaatt 342
||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct: 488 agttaaaacagaagccacagcttgtcagagtgcacagaaccaggaagtccatcactaact 547
Query: 343 tcaggatccatgctgggtaagtccagtttgtcctcagagctttgatccctgtgtcctttt 402
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcaggatccatgctggggaagtccagtttgtcctcagagctttgatccctgtgtcctttt 607
Query: 403 cctggtatatattttagggaatcaatgaagtatgagcgtacaattctcagcatgttagag 462
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 608 actggtatatattttagggaatcaatgaaatatgagcgtaccattctcaacatgttagag 667
Query: 463 ctcactgagcccctacaaatgggggaggcacctgtggatgaaactccca 511
||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct: 668 ctcactgagcccctacagatggggcaggcagctgtggatgaaactccca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 916
Length adjustment: 10
Effective length of query: 501
Effective length of database: 906
Effective search space: 453906
Effective search space used: 453906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
