BAC Information

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BAC

Clone NameMSMg01-409B07
Chromosome4 (Build37)
Map Location 80,626,255 - 80,626,608
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B07.T7 (MSMg01no409_b07.b1)MSMg01-409B07.TJ (MSMg01no409_b07.g1)
ACCAG506650AG506651
length790763
length of high quality
(start - end)
517 (45 - 561)465 (57 - 521)
definitionCHROMAT_FILE: MSMg01no409_b07.b1 PHD_FILE: MSMg01no409_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:18 2005CHROMAT_FILE: MSMg01no409_b07.g1 PHD_FILE: MSMg01no409_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAAGTCTTGATAGTGTCAATTTCTTCCTCACCACTTTGTTCTAC
AAAAATAATCATGCCCTTTATATTATTCATTAATATTTACATTTTGTGCT
GCTGCATACTTTTGTATGTAAAGTTGTTTGTCATTTAAACGTATGTACTG
TTGCAGTAAATCTCCAACCCAATATGCCCTGGCAATGAAAACACAACTCA
AATAATATGAATACATGCTGTGCACCCAGACTGGGCAGACCTAGTGCTCC
TCTACCATTTCCCACATCTATGAGACCCCTTAAAACTTTCGGGTTTTCCA
GGCCATGTGTTTCTGCTCTGCTTTTCTTCTTCTTCCTCCTCTTCAAAGGG
AGAGAAGAAGGAGAAAATGGAAGAGGGAGAAGACGCAGAAGAGGACCATA
GATATGTGCAAGGTGAGCCTTGTCAAAGCAACCAAATGTCAAGTGGGTCA
TAATACAGCAAAGTAAGTGAGTTGAACAGTCCTGACTGAGGGGTCTGTGT
GAGTTCCATAAGAAGAGTCCATTTATCTTGTTTGTGCTTGTGTTGCCCAA
TTAAAGCATGGGTCACTTTCTGGGCCTGTCTGCTGGCAACTTTTCTGTTG
TTAAACCAAAAAGGTGAATTCTCCTTAATGGAAAACCAGAATAACCCTTA
GNATCCCTTTCCTATTAAATTGGCTTTTTCAAAGAGCAAAATCTTATCGC
TTGTTTATAAAATCCTTTTTCCACACTCTTTTACATGACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAGCCAGAAGCTGGAAAG
AACACAGATGCCCCTCAACAGAGGAGTGGATACAGAAAATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAATCC
AATCACAAAAGAACTCACACAATAAGTACTCACTGATAAGTGGATATTAG
CCCAGAAACTTAGGATACCCTAGAGAAAGGCCACAGGGCCTCAGCCCTGC
ACAAAAAAAAAAAAAAAAACACGGGCAAGTAGAAAATGCTGAGAATGGAA
GAACTATTCTTTCCCATTGAACAGCACAACAGTTGGTTATCTAATACCAA
ATGGTCAACCCTGAAAACCTACAACTCAATAACATTATATAGACTAAGCA
AGTTGCATTTAGAAATACNTATATACATAAAGACACACATGCGACACTAG
ATAATAAAAATAAAGTCATGTATTAAAAATTGAAGCAGGATGCATTAATG
GAAGAGTTTGCCTAAATGAAGGAGAGGAAATTGACCATTATATTGTATCT
TTAAAAAGAAAGAATAATTTAAAAAGGCAGTGGTAGAATAATTGGTATTT
CCCCTGGGGGGACAAAATGGTGGGTTCCTCTTAGGATTGTGTGGTAGCTC
CGAGCAATGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b07.b1 MSMg01no409_b07.b1 CHROMAT_FILE:
MSMg01no409_b07.b1 PHD_FILE: MSMg01no409_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:18 2005
         (517 letters)



>mm_chr4_80626255_80627171
          Length = 917

 Score =  685 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaagtcttgatagtgtcaatttcttcctcaccactttgttctacaaaaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaattccagaagtcttgatagtgtcaatttcttcctcaccactttgttctacaaaaataa 295

                                                                       
Query: 65  tcatgccctttatattattcattaatatttacattttgtgctgctgcatacttttgtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tcatgccctttatattattcattaatatttacattttgtgctgctgcatacttttgtatg 235

                                                                       
Query: 125 taaagttgtttgtcatttaaacgtatgtactgttgcagtaaatctccaacccaatatgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taaagttgtttgtcatttaaacgtatgtactgttgcagtaaatctccaacccaatatgcc 175

                                                                       
Query: 185 ctggcaatgaaaacacaactcaaataatatgaatacatgctgtgcacccagactgggcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ctggcaatgaaaacacaactcaaataatatgaatacatgctgtgcacccagactgggcag 115

                                                                       
Query: 245 acctagtgctcctctaccatttcccacatctatgagaccccttaaaactttcgggttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 acctagtgctcctctaccatttcccacatctatgagaccccttaaaactttcgggttttc 55

                                                                 
Query: 305 caggccatgtgtttctgctctgcttttcttcttcttcctcctcttcaaagggag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  caggccatgtgtttctgctctgcttttcttcttcttcctcctcttcaaagggag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)