BAC Information

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BAC

Clone NameMSMg01-409E13
Chromosome4 (Build37)
Map Location 151,520,577 - 151,674,096
singlet/doubletdoublet
Overlap geneEspn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25
Downstream geneRnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833, LOC100042089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409E13.T7 (MSMg01no409_e13.b1)MSMg01-409E13.TJ (MSMg01no409_e13.g1)
ACCAG506805AG506806
length782787
length of high quality
(start - end)		539 (45 - 583)250 (77 - 326)
definitionCHROMAT_FILE: MSMg01no409_e13.b1 PHD_FILE: MSMg01no409_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:35 2005CHROMAT_FILE: MSMg01no409_e13.g1 PHD_FILE: MSMg01no409_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,520,577 - 151,521,111)(151,673,847 - 151,674,096)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTCCCAATGCCAGAGGTCACATGGGCACACAGACCCTGACCCCA
GTTCTTAATATCCCCTCTTGCCTGAGCTCAACCTGGCAGCCATACAGAGA
TCCCTTCTTATCATCCTGATCACAGACCATGACAGGGCTTGGAGCCCGGG
CTCTCTGTCTAATTCCCGGAGATTCATGGTGACTCCTGGACAGTCTGGTA
GTTCCTCAAAGGGGCCATCTGGCACAGGGCCCAAGCTTACTTAGCACCTG
GCCTGGTTTGGGAGGGGTCAGGGTATCCAAGTGCTCACCTCACAAGTGTC
ACAGCCCCGATGGAGTCTTCTTACACATGGGAATCTCAGCCCATGAAGGA
CGCTAGGATTGTCATTGGTGGGGCCAAGGGGCTAGCAGTTCTCGTTAGAA
CTCAGAATGCTGTCACCATCCTGGACCTCTAGCTACACTGTGTTTGACAG
AGAGCGTCTACAGTACATGACCTGTCATCTTAGGAACTCAGTGTCCTGTG
CTTAAAGTGAGGGGGTGTGACAGGCTCATCAGAAGCTCAGNCTGGGGGCC
GAGGACGTGTCACAGGTATGGCCCGGCTCTAATCTGGAATGCTCACAGGA
GTCTGGGCCAAAGCTTTTCATGTTCGCCGAAGGTGGATGGCCAAACTCCC
TCTCCCCGGGCTTGGGGGCCACTGAATTGGCCCTCAACCCTGGCTCCCTG
AAGAGAAACATTCCCCTCCAGTGTGGCTACGG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGCGAATGGAGCCTGCCCTGT
ATAAACAGCTTAGGGAGAGGAGAGGGCTGGGGAGAAGAGCTCAGGGGAGA
TTAGGCCTGGGAGGCGGCTCAATGTCATCTTCCCAGCCTCTCTCCCACAC
CTAGGAAAGTAGGGCACACCAACCTGGCCAGAAGATGTTCTCGAGCGTGA
ACTCTATCCATGAAGACAGGGCAGCTACCGTGTACTCCAGGCTGTGATTC
AGGAGGAAGGAGTCCAGGGACAGACTTTTGGGTTTATTGACAGCTGTCAC
TAAGTACTCAGAATAGTGGAACAGAGACCGCGAGCACACGTACCTATTTA
AAAACAAAACGGAAGAGGTAAAGCAGGGAAGAGAACCAAGTTAGGCAAAG
GCACAGATCTGGTCTGCTCAGCTGCCCCAGACTGGCATGTGGTGCTGCCG
TCACCCACCTGGGTGACACCAGGCACACACACACGCAGGTCACTCCCTTC
CCTCTCCAGCAGGTTCAAGTGTGGTTCCCTGGTGCTATTCATGTTTCTGA
ACGTCTCAGACTCTTCTTAAATGATTCCCTAGCTGTTCGCCAAGCTATGG
ACCCCTTACGCCTTGTATTTTTTTTTTTTTCTTTTTGTCTGCTTGAGAGG
GGGAACTCATTGTGTTATTACTTCGCGCATTGTACTTTTCCCCCTGGTTC
ATCGCCCTCTGGGATTTGTTTCCCATATGTATCGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_e13.b1 MSMg01no409_e13.b1 CHROMAT_FILE:
MSMg01no409_e13.b1 PHD_FILE: MSMg01no409_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:35 2005
         (539 letters)



>mm_chr4_151520373_151521311
          Length = 939

 Score = 1004 bits (519), Expect = 0.0
 Identities = 531/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactcccaatgccagaggtcacatgggcacacagaccctgaccccagttcttaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactcccaaggccagaggtcacatgggcacacagaccctgaccccagttcttaa 264

                                                                       
Query: 65  tatcccctcttgcctgagctcaacctggcagccatacagagatcccttcttatcatcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatcccctcttgcctgagctcaacctggcagccatacagagatcccttcttatcatcctg 324

                                                                       
Query: 125 atcacagaccatgacagggcttggagcccgggctctctgtctaattcccggagattcatg 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcacagaccatgacagggcttggagcccgggctctctgtctaattcccggagattcatg 384

                                                                       
Query: 185 gtgactcctggacagtctggtagttcctcaaaggggccatctggcacagggcccaagctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgactcctggacagtctggtagttcctcaaaggggccatctggcacagggcccaagctt 444

                                                                       
Query: 245 acttagcacctggcctggtttgggaggggtcagggtatccaagtgctcacctcacaagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttagcacctggcctggtttgggaggggtcagggtatccaagtgctcacctcacaagtg 504

                                                                       
Query: 305 tcacagccccgatggagtcttcttacacatgggaatctcagcccatgaaggacgctagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 tcacagccccgatggagtcttcttacacatgggaatctcagcccatgaaggacgctaggc 564

                                                                       
Query: 365 ttgtcattggtggggccaaggggctagcagttctcgttagaactcagaatgctgtcacca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtcattggtggggccaaggggctagcagttctcgttagaactcagaatgctgtcacca 624

                                                                       
Query: 425 tcctggacctctagctacactgtgtttgacagagagcgtctacagtacatgacctgtcat 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctggacctctagctacactgtgtttgacagagagcgtctacagtacatgacctgtcat 684

                                                                  
Query: 485 cttaggaactcagtgtcctgtgcttaaagtgagggggtgtgacaggctcatcaga 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttaggaactcagtgtcctgtgcttaaagtgagggggtgtgacaggctcatcaga 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_e13.g1 MSMg01no409_e13.g1 CHROMAT_FILE:
MSMg01no409_e13.g1 PHD_FILE: MSMg01no409_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:35 2005
         (250 letters)



>mm_chr4_151673647_151674296
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagcgaatggagcctgccctgtataaacagcttagggagaggagagggctggggagaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tccagcgagtggagcctgccctgtataaacagcttagggagaggagagggctggggagaa 391

                                                                       
Query: 61  gagctcaggggagattaggcctgggaggcggctcaatgtcatcttcccagcctctctccc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 390 gagctcaggggagattaggcctgggaggcggctcaatgtcatcttcccggcctctctccc 331

                                                                       
Query: 121 acacctaggaaagtagggcacaccaacctggccagaagatgttctcgagcgtgaactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acacctaggaaagtagggcacaccaacctggccagaagatgttctcgagcgtgaactcta 271

                                                                       
Query: 181 tccatgaagacagggcagctaccgtgtactccaggctgtgattcaggaggaaggagtcca 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tccaagaagacagggcagctaccgtgtactccaggctgtgattcaggaggaaggagtcca 211

                     
Query: 241 gggacagact 250
           ||||||||||
Sbjct: 210 gggacagact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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